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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13350 and 13351 are separated by 206 nucleotides
13351 and 13352 are separated by 173 nucleotides
13352 and 13353 are separated by 304 nucleotides
13353 and 13354 are separated by 643 nucleotides
mRNA_4982: 13350 - K17879 NUDT7 peroxisomal coenzyme A diphosphatase NUDT7, at 1,471,731 to 1,473,077
13350
mRNA_4983: 13351 - SUPERFAMILY--SSF48371, at 1,473,284 to 1,476,238
13351
mRNA_4984: 13352 - HMMPfam-OsmC-like protein-PF02566,SUPERFAMILY--SSF82784, at 1,476,412 to 1,477,119
13352
mRNA_4985: 13353 - BLAST vps9 domain protein [Zymoseptoria brevis], at 1,477,424 to 1,478,250
13353
mRNA_4986: 13354 - K17943 PUM pumilio RNA-binding family, at 1,478,894 to 1,482,308
13354
Group
Condition
mRNA
_4982
mRNA
_4983
mRNA
_4984
mRNA
_4985
mRNA
_4986
13350
13351
13352
13353
13354
auxotrophy
Dropout Complete
-0.1
-0.8
-0.4
-1.4
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-1.9
-0.4
+0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-1.8
+0.0
+0.5
-0.6
growth on ricinoleic acid
YNB Glucose
-0.1
-1.1
-0.0
+0.1
-0.9
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.8
-0.4
+0.5
-0.7
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-1.0
-0.1
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.8
-0.4
-0.4
+0.3
auxotrophy
YNB Glucose
-0.1
-0.9
+0.0
+0.5
-0.5
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
-0.5
-0.7
+0.4
growth on oleic acid
YNB Glucose
-0.1
-0.1
-0.2
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
-0.0
+0.4
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
-0.2
-0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.8
-0.3
+0.9
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
+0.2
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.5
-0.6
-0.7
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
+0.0
+0.4
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.4
-0.3
+0.6
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.2
+0.3
-0.5
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
-0.1
+0.2
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.7
-0.4
+0.1
+0.5
growth on ypd
YPD
+0.1
+0.3
+0.2
+1.0
+0.3
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