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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13351 and 13352 are separated by 173 nucleotides
13352 and 13353 are separated by 304 nucleotides
13353 and 13354 are separated by 643 nucleotides
13354 and 13355 are separated by 503 nucleotides
mRNA_4983: 13351 - SUPERFAMILY--SSF48371, at 1,473,284 to 1,476,238
13351
mRNA_4984: 13352 - HMMPfam-OsmC-like protein-PF02566,SUPERFAMILY--SSF82784, at 1,476,412 to 1,477,119
13352
mRNA_4985: 13353 - BLAST vps9 domain protein [Zymoseptoria brevis], at 1,477,424 to 1,478,250
13353
mRNA_4986: 13354 - K17943 PUM pumilio RNA-binding family, at 1,478,894 to 1,482,308
13354
mRNA_4987: 13355 - Hypothetical Protein, at 1,482,812 to 1,483,516
13355
Group
Condition
mRNA
_4983
mRNA
_4984
mRNA
_4985
mRNA
_4986
mRNA
_4987
13351
13352
13353
13354
13355
auxotrophy
Dropout Complete
-0.8
-0.4
-1.4
-0.5
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.9
-0.4
+0.2
-0.4
+0.1
growth on ricinoleic acid
YNB Glucose
-1.1
-0.0
+0.1
-0.9
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.8
+0.0
+0.5
-0.6
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-1.0
-0.1
+0.1
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.8
-0.4
+0.5
-0.7
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.8
-0.4
-0.4
+0.3
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
-0.5
-0.7
+0.4
-0.1
auxotrophy
YNB Glucose
-0.9
+0.0
+0.5
-0.5
+0.1
growth on oleic acid
YNB Glucose
-0.1
-0.2
-0.2
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
-0.1
-0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.6
-0.7
+0.7
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.2
-0.3
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.0
+0.4
-0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
-0.3
+0.9
+0.4
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.0
+0.4
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.3
+0.6
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.3
-0.5
+0.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.1
+0.2
+0.6
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
-0.4
+0.1
+0.5
+0.1
growth on ypd
YPD
+0.3
+0.2
+1.0
+0.3
-0.1
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