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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13352 and 13353 are separated by 304 nucleotides
13353 and 13354 are separated by 643 nucleotides
13354 and 13355 are separated by 503 nucleotides
13355 and 13356 are separated by 507 nucleotides
mRNA_4984: 13352 - HMMPfam-OsmC-like protein-PF02566,SUPERFAMILY--SSF82784, at 1,476,412 to 1,477,119
13352
mRNA_4985: 13353 - BLAST vps9 domain protein [Zymoseptoria brevis], at 1,477,424 to 1,478,250
13353
mRNA_4986: 13354 - K17943 PUM pumilio RNA-binding family, at 1,478,894 to 1,482,308
13354
mRNA_4987: 13355 - Hypothetical Protein, at 1,482,812 to 1,483,516
13355
mRNA_4988: 13356 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 1,484,024 to 1,484,924
13356
Group
Condition
mRNA
_4984
mRNA
_4985
mRNA
_4986
mRNA
_4987
mRNA
_4988
13352
13353
13354
13355
13356
auxotrophy
Dropout Complete
-0.4
-1.4
-0.5
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.5
-0.7
+0.4
-0.1
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.7
+0.7
-0.2
-0.9
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
-0.9
+0.1
-0.3
growth on oleic acid
YNB Glucose
-0.2
-0.2
+0.1
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.4
+0.3
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.2
-0.4
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.5
-0.7
+0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.3
+0.1
-0.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
-0.1
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.4
+0.0
-0.0
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
-0.4
-0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.5
-0.6
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.4
-0.0
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.6
-0.0
-0.1
-0.1
auxotrophy
YNB Glucose
+0.0
+0.5
-0.5
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.1
+0.5
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.5
+0.4
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
+0.6
+0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.9
+0.4
+0.0
-0.1
growth on ypd
YPD
+0.2
+1.0
+0.3
-0.1
+0.3
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