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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13354 and 13355 are separated by 503 nucleotides
13355 and 13356 are separated by 507 nucleotides
13356 and 13357 are separated by 760 nucleotides
13357 and 13358 are separated by 152 nucleotides
mRNA_4986: 13354 - K17943 PUM pumilio RNA-binding family, at 1,478,894 to 1,482,308
13354
mRNA_4987: 13355 - Hypothetical Protein, at 1,482,812 to 1,483,516
13355
mRNA_4988: 13356 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 1,484,024 to 1,484,924
13356
mRNA_4989: 13357 - Hypothetical Protein, at 1,485,685 to 1,486,453
13357
mRNA_4990: 13358 - K00354 E1.6.99.1 NADPH2 dehydrogenase, at 1,486,606 to 1,488,181
13358
Group
Condition
mRNA
_4986
mRNA
_4987
mRNA
_4988
mRNA
_4989
mRNA
_4990
13354
13355
13356
13357
13358
growth on ricinoleic acid
YNB Glucose
-0.9
+0.1
-0.3
+0.2
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
-0.2
-0.9
+0.0
-0.5
auxotrophy
Dropout Complete
-0.5
-0.1
-0.1
+0.0
-0.0
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.3
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.7
+0.1
+0.0
+0.2
-0.3
growth on oleic acid
YNB Oleic Acid
+0.4
-0.1
-0.8
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
+0.0
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.0
-0.5
-0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
+0.2
-0.1
+0.5
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.1
-0.2
+0.7
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
-0.3
-0.0
+0.1
growth on ypd
YPD
+0.3
-0.1
+0.3
-0.5
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
+0.0
-0.4
+0.1
auxotrophy
YNB Glucose
-0.5
+0.1
+0.0
+0.3
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.1
+0.4
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.1
-0.1
-0.3
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.0
-0.1
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
-0.1
+0.1
+0.7
ypd buoyancy
40 hrs High Buoyancy
+0.6
+0.0
+0.0
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.1
-0.1
-0.2
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.1
+0.1
-0.3
+0.7
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