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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13356 and 13357 are separated by 760 nucleotides
13357 and 13358 are separated by 152 nucleotides
13358 and 13359 are separated by 353 nucleotides
13359 and 13360 are separated by 955 nucleotides
mRNA_4988: 13356 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 1,484,024 to 1,484,924
13356
mRNA_4989: 13357 - Hypothetical Protein, at 1,485,685 to 1,486,453
13357
mRNA_4990: 13358 - K00354 E1.6.99.1 NADPH2 dehydrogenase, at 1,486,606 to 1,488,181
13358
mRNA_4991: 13359 - Hypothetical Protein, at 1,488,535 to 1,491,302
13359
mRNA_4992: 13360 - Hypothetical Protein, at 1,492,258 to 1,494,685
13360
Group
Condition
mRNA
_4988
mRNA
_4989
mRNA
_4990
mRNA
_4991
mRNA
_4992
13356
13357
13358
13359
13360
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
+0.0
-0.5
+0.1
-1.5
growth on oleic acid
YNB Oleic Acid
-0.8
-0.1
+0.0
+0.0
-0.1
growth on oleic acid
YNB Glucose
-0.3
+0.1
-0.4
+0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.0
+0.1
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.4
+0.1
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.3
+0.3
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
-0.3
+0.2
-0.4
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.1
+0.3
+0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.5
-0.3
-0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.0
+0.1
-0.1
+0.4
auxotrophy
Dropout Complete
-0.1
+0.0
-0.0
+0.3
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.7
-0.7
+0.2
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.2
+0.3
-0.4
+1.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.2
-0.3
+0.3
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.1
-0.1
+0.0
+0.8
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.3
+0.7
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
+0.7
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
+0.6
+0.3
+0.5
auxotrophy
YNB Glucose
+0.0
+0.3
+0.0
+0.3
+0.7
growth on ypd
YPD
+0.3
-0.5
-0.1
+0.8
+1.0
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.3
-0.1
+0.5
+0.8
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