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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13365 and 13366 are separated by 579 nucleotides
13366 and 13367 are separated by 367 nucleotides
13367 and 13368 are separated by 196 nucleotides
13368 and 13369 are separated by 346 nucleotides
mRNA_4997: 13365 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 1,500,389 to 1,502,919
13365
mRNA_4998: 13366 - KOG4169 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases, at 1,503,499 to 1,504,533
13366
mRNA_4999: 13367 - Hypothetical Protein, at 1,504,901 to 1,505,364
13367
mRNA_5000: 13368 - K16302 CNNM metal transporter CNNM, at 1,505,561 to 1,508,084
13368
mRNA_5001: 13369 - K00649 GNPAT glyceronephosphate O-acyltransferase, at 1,508,431 to 1,511,895
13369
Group
Condition
mRNA
_4997
mRNA
_4998
mRNA
_4999
mRNA
_5000
mRNA
_5001
13365
13366
13367
13368
13369
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.2
N.D.
-0.7
-0.3
growth on oleic acid
YNB Glucose
-0.2
-0.1
N.D.
-0.8
-0.1
auxotrophy
YNB Glucose
-0.3
-0.0
N.D.
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.2
N.D.
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
N.D.
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.0
N.D.
-0.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.2
N.D.
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.1
N.D.
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.1
N.D.
-0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
N.D.
-0.3
-0.0
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
N.D.
-0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.2
N.D.
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.2
N.D.
-0.4
+0.0
auxotrophy
Dropout Complete
-0.2
-0.1
N.D.
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
N.D.
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
N.D.
+0.3
-0.2
growth on ypd
YPD
+0.1
+0.2
N.D.
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.1
N.D.
-0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.0
N.D.
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.3
N.D.
-0.4
+0.3
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