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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13371 and 13372 are separated by 222 nucleotides
13372 and 13373 are separated by 5684 nucleotides
13373 and 13374 are separated by 269 nucleotides
13374 and 13375 are separated by 296 nucleotides
mRNA_5003: 13371 - Hypothetical Protein, at 1,515,241 to 1,515,824
13371
mRNA_5004: 13372 - K12848 SNU23 U4/U6.U5 tri-snRNP component SNU23, at 1,516,047 to 1,517,117
13372
mRNA_5005: 13373 - K10956 SEC61A protein transport protein SEC61 subunit alpha, at 1,522,802 to 1,524,731
13373
mRNA_5006: 13374 - K20299 VPS53 vacuolar protein sorting-associated protein 53, at 1,525,001 to 1,528,336
13374
mRNA_5007: 13375 - Hypothetical Protein, at 1,528,633 to 1,529,200
13375
Group
Condition
mRNA
_5003
mRNA
_5004
mRNA
_5005
mRNA
_5006
mRNA
_5007
13371
13372
13373
13374
13375
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
-1.8
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
-1.3
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
-0.7
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
-0.2
-0.6
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
-0.4
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
+0.2
-0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
-0.6
-0.2
+0.2
growth on oleic acid
YNB Glucose
+0.0
N.D.
-0.1
-0.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
+0.0
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
+0.1
-0.1
+0.1
growth on ypd
YPD
-0.1
N.D.
-0.4
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
N.D.
+0.0
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
N.D.
-0.0
-0.3
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
+0.2
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
+0.6
-0.0
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
+0.4
-0.5
+0.1
auxotrophy
Dropout Complete
+0.1
N.D.
+0.5
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
+0.5
+0.0
-0.3
auxotrophy
YNB Glucose
+0.0
N.D.
+0.7
-0.0
-0.3
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.2
+0.4
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.4
N.D.
+0.2
+0.1
+0.1
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