Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
13373 and 13374 are separated by 269 nucleotides
13374 and 13375 are separated by 296 nucleotides
13375 and 13376 are separated by 1146 nucleotides
13376 and 13377 are separated by 47 nucleotides
mRNA_5005: 13373 - K10956 SEC61A protein transport protein SEC61 subunit alpha, at 1,522,802 to 1,524,731
13373
mRNA_5006: 13374 - K20299 VPS53 vacuolar protein sorting-associated protein 53, at 1,525,001 to 1,528,336
13374
mRNA_5007: 13375 - Hypothetical Protein, at 1,528,633 to 1,529,200
13375
mRNA_5008: 13376 - KOG2319 Vacuolar assembly/sorting protein VPS9, at 1,530,347 to 1,531,248
13376
mRNA_5009: 13377 - K07195 EXOC7, EXO70 exocyst complex component 7, at 1,531,296 to 1,533,936
13377
Group
Condition
mRNA
_5005
mRNA
_5006
mRNA
_5007
mRNA
_5008
mRNA
_5009
13373
13374
13375
13376
13377
ypd buoyancy
40 hrs No Buoyancy Separation
-1.8
-0.1
+0.1
-0.3
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.6
-0.2
+0.2
-0.5
-0.1
growth on oleic acid
YNB Glucose
-0.1
-0.0
-0.3
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.3
-0.0
-0.2
+0.8
-0.0
growth on ricinoleic acid
YNB Glucose
+0.2
-0.2
-0.4
-0.3
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.2
-0.1
-0.5
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.6
-0.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.1
-0.1
+0.7
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.5
+0.1
-0.2
-0.1
auxotrophy
YNB Glucose
+0.7
-0.0
-0.3
-0.4
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.0
-0.3
-0.3
-0.1
growth on ypd
YPD
-0.4
+0.1
+0.3
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.1
-0.1
+0.3
-0.2
auxotrophy
Dropout Complete
+0.5
+0.1
-0.4
-0.5
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.0
-0.0
-0.5
-0.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.4
-0.3
-0.5
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.0
+0.1
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
+0.1
-0.3
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.3
+0.3
+0.6
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.2
+0.2
+0.7
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
+0.1
+0.7
+0.1
remove
mRNA_5005
plot
remove
mRNA_5006
plot
remove
mRNA_5007
remove
mRNA_5008
plot
remove
mRNA_5009
plot