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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13376 and 13377 are separated by 47 nucleotides
13377 and 13378 are separated by 506 nucleotides
13378 and 13379 are separated by 171 nucleotides
13379 and 13380 are separated by 218 nucleotides
mRNA_5008: 13376 - KOG2319 Vacuolar assembly/sorting protein VPS9, at 1,530,347 to 1,531,248
13376
mRNA_5009: 13377 - K07195 EXOC7, EXO70 exocyst complex component 7, at 1,531,296 to 1,533,936
13377
mRNA_5010: 13378 - K17576 PPP1R37, LRRC68 protein phosphatase 1 regulatory subunit 37, at 1,534,443 to 1,540,178
13378
mRNA_5011: 13379 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1,540,350 to 1,542,527
13379
mRNA_5012: 13380 - K01886 QARS, glnS glutaminyl-tRNA synthetase, at 1,542,746 to 1,545,688
13380
Group
Condition
mRNA
_5008
mRNA
_5009
mRNA
_5010
mRNA
_5011
mRNA
_5012
13376
13377
13378
13379
13380
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.1
-0.2
-1.1
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
+0.4
-0.9
-1.0
growth on ricinoleic acid
YNB Glucose
-0.3
-0.0
+0.5
-0.5
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.4
-0.4
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.1
+0.5
-0.4
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
+0.1
+0.3
-0.0
-1.8
growth on ypd
YPD
-0.1
-0.2
+0.2
-0.1
-0.8
growth on oleic acid
YNB Oleic Acid
-0.5
+0.1
+0.4
-0.4
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.1
-0.1
+0.1
+0.1
auxotrophy
Dropout Complete
-0.5
+0.1
+0.4
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.0
-0.1
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.1
+0.5
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.2
+0.1
-0.6
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+0.1
+0.0
-0.1
+0.4
auxotrophy
YNB Glucose
-0.4
-0.2
+0.6
-0.2
+0.1
growth on oleic acid
YNB Glucose
-0.4
+0.1
+0.5
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
-0.2
-0.3
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.1
+0.5
+0.2
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
-0.1
+0.2
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
-0.0
-0.2
-0.3
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
+0.1
-0.3
-0.0
+0.6
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