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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13378 and 13379 are separated by 171 nucleotides
13379 and 13380 are separated by 218 nucleotides
13380 and 13381 are separated by 232 nucleotides
13381 and 13382 are separated by 1189 nucleotides
mRNA_5010: 13378 - K17576 PPP1R37, LRRC68 protein phosphatase 1 regulatory subunit 37, at 1,534,443 to 1,540,178
13378
mRNA_5011: 13379 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1,540,350 to 1,542,527
13379
mRNA_5012: 13380 - K01886 QARS, glnS glutaminyl-tRNA synthetase, at 1,542,746 to 1,545,688
13380
mRNA_5013: 13381 - BLAST regulatory protein wetA [Paracoccidioides lutzii ..., at 1,545,921 to 1,548,060
13381
mRNA_5014: 13382 - K01621 xfp, xpk xylulose-5-phosphate/fructose-6-phosphate phosphoketolase, at 1,549,250 to 1,553,078
13382
Group
Condition
mRNA
_5010
mRNA
_5011
mRNA
_5012
mRNA
_5013
mRNA
_5014
13378
13379
13380
13381
13382
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-1.1
-0.9
+0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.0
-1.8
+0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.9
-1.0
+0.4
-0.2
growth on ricinoleic acid
YNB Glucose
+0.5
-0.5
-0.9
+0.1
-0.4
growth on ypd
YPD
+0.2
-0.1
-0.8
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.6
+0.2
-0.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
-0.2
-0.4
+0.1
growth on oleic acid
YNB Oleic Acid
+0.4
-0.4
-0.3
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.4
-0.4
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
+0.1
+0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.2
-0.2
+0.0
+0.6
auxotrophy
Dropout Complete
+0.4
-0.2
-0.1
+0.5
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
+0.1
-0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.2
-0.6
+0.5
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.4
+0.2
+0.5
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.3
+0.6
+0.5
-0.1
growth on oleic acid
YNB Glucose
+0.5
-0.2
+0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.0
+0.6
+0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
+0.4
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.2
+0.1
+0.4
auxotrophy
YNB Glucose
+0.6
-0.2
+0.1
+0.7
-0.4
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