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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13379 and 13380 are separated by 218 nucleotides
13380 and 13381 are separated by 232 nucleotides
13381 and 13382 are separated by 1189 nucleotides
13382 and 13383 are separated by 480 nucleotides
mRNA_5011: 13379 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1,540,350 to 1,542,527
13379
mRNA_5012: 13380 - K01886 QARS, glnS glutaminyl-tRNA synthetase, at 1,542,746 to 1,545,688
13380
mRNA_5013: 13381 - BLAST regulatory protein wetA [Paracoccidioides lutzii ..., at 1,545,921 to 1,548,060
13381
mRNA_5014: 13382 - K01621 xfp, xpk xylulose-5-phosphate/fructose-6-phosphate phosphoketolase, at 1,549,250 to 1,553,078
13382
mRNA_5015: 13383 - K00925 ackA acetate kinase, at 1,553,559 to 1,555,008
13383
Group
Condition
mRNA
_5011
mRNA
_5012
mRNA
_5013
mRNA
_5014
mRNA
_5015
13379
13380
13381
13382
13383
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.1
-0.9
+0.2
-0.3
+0.0
growth on ricinoleic acid
YNB Glucose
-0.5
-0.9
+0.1
-0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
-1.0
+0.4
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-1.8
+0.1
+0.0
+0.2
growth on ypd
YPD
-0.1
-0.8
-0.2
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.4
+0.3
-0.2
-0.4
auxotrophy
Dropout Complete
-0.2
-0.1
+0.5
-0.4
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.2
-0.4
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
+0.2
-0.3
+0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.4
-0.3
+0.2
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
+0.1
+0.1
-0.5
auxotrophy
YNB Glucose
-0.2
+0.1
+0.7
-0.4
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.2
+0.5
-0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.2
+0.0
+0.6
-0.6
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
-0.1
+0.3
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.6
+0.5
-0.3
+0.3
growth on oleic acid
YNB Glucose
-0.2
+0.1
+0.2
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.4
+0.1
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.6
+0.5
-0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
+0.1
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.6
+0.0
+0.2
-0.2
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