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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13381 and 13382 are separated by 1189 nucleotides
13382 and 13383 are separated by 480 nucleotides
13383 and 13384 are separated by 718 nucleotides
13384 and 13385 are separated by 271 nucleotides
mRNA_5013: 13381 - BLAST regulatory protein wetA [Paracoccidioides lutzii ..., at 1,545,921 to 1,548,060
13381
mRNA_5014: 13382 - K01621 xfp, xpk xylulose-5-phosphate/fructose-6-phosphate phosphoketolase, at 1,549,250 to 1,553,078
13382
mRNA_5015: 13383 - K00925 ackA acetate kinase, at 1,553,559 to 1,555,008
13383
mRNA_5016: 13384 - BLAST UPF0643 protein PB2B2.08 [Hypsizygus marmoreus], at 1,555,727 to 1,556,735
13384
mRNA_5017: 13385 - K08963 mtnA methylthioribose-1-phosphate isomerase, at 1,557,007 to 1,558,590
13385
Group
Condition
mRNA
_5013
mRNA
_5014
mRNA
_5015
mRNA
_5016
mRNA
_5017
13381
13382
13383
13384
13385
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.1
-0.1
+0.1
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.0
+0.2
-0.1
-1.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.3
+0.0
-0.0
-0.9
growth on ricinoleic acid
YNB Glucose
+0.1
-0.4
-0.2
-0.0
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.3
+0.3
+0.1
-1.4
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.2
-0.4
+0.2
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.5
+0.4
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.2
-0.1
+0.6
-0.8
auxotrophy
YNB Glucose
+0.7
-0.4
-0.4
+0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.2
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.3
-0.3
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.1
-0.4
+0.5
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.2
-0.2
-0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.6
-0.6
-0.2
+0.1
auxotrophy
Dropout Complete
+0.5
-0.4
-0.5
+0.1
+0.3
growth on oleic acid
YNB Glucose
+0.2
-0.1
+0.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.2
-0.2
+0.8
-0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.4
-0.3
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.3
-0.1
+0.3
+0.2
growth on ypd
YPD
-0.2
+0.1
-0.3
+0.0
+1.4
growth on oleic acid
YNB Oleic Acid
+0.2
-0.2
+0.2
+0.5
+0.5
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