Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 13383 and 13384 are separated by 718 nucleotides13384 and 13385 are separated by 271 nucleotides13385 and 13386 are separated by 157 nucleotides13386 and 13387 are separated by 70 nucleotides mRNA_5015: 13383 - K00925 ackA acetate kinase, at 1,553,559 to 1,555,008 13383 mRNA_5016: 13384 - BLAST UPF0643 protein PB2B2.08 [Hypsizygus marmoreus], at 1,555,727 to 1,556,735 13384 mRNA_5017: 13385 - K08963 mtnA methylthioribose-1-phosphate isomerase, at 1,557,007 to 1,558,590 13385 mRNA_5018: 13386 - Hypothetical Protein, at 1,558,748 to 1,560,542 13386 mRNA_5019: 13387 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1,560,613 to 1,563,320 13387
Group Condition mRNA_5015 mRNA_5016 mRNA_5017 mRNA_5018 mRNA_5019
13383 13384 13385 13386 13387
facs on lipid accumulation Sorted No BODIPY Gate +0.2 -0.1 -1.5 -0.2 -0.3
facs on lipid accumulation Sorted High BODIPY Gate -0.1 +0.1 -1.1 -0.2 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.3 +0.1 -1.4 -0.1 -0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.5 +0.4 -0.7 -0.1 -0.3
growth on ricinoleic acid YNB Ricinoleic Acid +0.0 -0.0 -0.9 -0.2 +0.1
growth on ricinoleic acid YNB Glucose -0.2 -0.0 -0.3 -0.3 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 +0.6 -0.8 -0.2 -0.3
auxotrophy YNB Glucose 75mM Arginine -0.4 +0.2 -0.7 -0.1 +0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.4 +0.5 -0.7 -0.0 -0.2
auxotrophy YNB Glucose -0.4 +0.1 -0.3 -0.2 +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 +0.8 -0.7 -0.3 -0.1
auxotrophy Dropout Complete -0.5 +0.1 +0.3 -0.3 +0.0
ypd buoyancy 40 hrs High Buoyancy -0.3 -0.0 -0.1 +0.1 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 -0.0 -0.1 -0.1 +0.1
ypd buoyancy 40 hrs Low Buoyancy -0.2 +0.1 -0.2 +0.0 +0.0
growth on oleic acid YNB Glucose +0.1 -0.1 -0.1 +0.0 -0.2
ypd buoyancy 40 hrs Median Buoyancy -0.3 -0.1 +0.1 -0.1 +0.0
ypd buoyancy 40 hrs No Buoyancy Separation -0.6 -0.2 +0.1 +0.3 +0.3
auxotrophy YNB Glucose 75mM Methionine -0.1 +0.3 +0.2 -0.2 +0.2
growth on ypd YPD -0.3 +0.0 +1.4 +0.0 -0.1
growth on oleic acid YNB Oleic Acid +0.2 +0.5 +0.5 +0.3 +0.0
remove
mRNA_5015
plot
remove
mRNA_5016
plot
remove
mRNA_5017
remove
mRNA_5018
plot
remove
mRNA_5019
plot