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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13383 and 13384 are separated by 718 nucleotides
13384 and 13385 are separated by 271 nucleotides
13385 and 13386 are separated by 157 nucleotides
13386 and 13387 are separated by 70 nucleotides
mRNA_5015: 13383 - K00925 ackA acetate kinase, at 1,553,559 to 1,555,008
13383
mRNA_5016: 13384 - BLAST UPF0643 protein PB2B2.08 [Hypsizygus marmoreus], at 1,555,727 to 1,556,735
13384
mRNA_5017: 13385 - K08963 mtnA methylthioribose-1-phosphate isomerase, at 1,557,007 to 1,558,590
13385
mRNA_5018: 13386 - Hypothetical Protein, at 1,558,748 to 1,560,542
13386
mRNA_5019: 13387 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1,560,613 to 1,563,320
13387
Group
Condition
mRNA
_5015
mRNA
_5016
mRNA
_5017
mRNA
_5018
mRNA
_5019
13383
13384
13385
13386
13387
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
-1.5
-0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
-1.1
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.1
-1.4
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.4
-0.7
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.0
-0.9
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.0
-0.3
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.6
-0.8
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.2
-0.7
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.5
-0.7
-0.0
-0.2
auxotrophy
YNB Glucose
-0.4
+0.1
-0.3
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.8
-0.7
-0.3
-0.1
auxotrophy
Dropout Complete
-0.5
+0.1
+0.3
-0.3
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.0
-0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.0
-0.1
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
-0.2
+0.0
+0.0
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.1
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
+0.1
-0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.2
+0.1
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.3
+0.2
-0.2
+0.2
growth on ypd
YPD
-0.3
+0.0
+1.4
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.5
+0.5
+0.3
+0.0
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