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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13385 and 13386 are separated by 157 nucleotides
13386 and 13387 are separated by 70 nucleotides
13387 and 13388 are separated by 326 nucleotides
13388 and 13389 are separated by 190 nucleotides
mRNA_5017: 13385 - K08963 mtnA methylthioribose-1-phosphate isomerase, at 1,557,007 to 1,558,590
13385
mRNA_5018: 13386 - Hypothetical Protein, at 1,558,748 to 1,560,542
13386
mRNA_5019: 13387 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1,560,613 to 1,563,320
13387
mRNA_5020: 13388 - K20178 VPS8 vacuolar protein sorting-associated protein 8, at 1,563,647 to 1,569,301
13388
mRNA_5021: 13389 - K14347 SLC10A7, P7 solute carrier family 10 (sodium/bile acid cotransporter), member 7, at 1,569,492 to 1,571,260
13389
Group
Condition
mRNA
_5017
mRNA
_5018
mRNA
_5019
mRNA
_5020
mRNA
_5021
13385
13386
13387
13388
13389
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.4
-0.1
-0.3
-1.4
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.1
-0.3
-1.4
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-1.5
-0.2
-0.3
-1.2
+0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.7
-0.1
+0.2
-0.8
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
-0.0
-0.2
-0.1
-0.1
growth on oleic acid
YNB Glucose
-0.1
+0.0
-0.2
-0.5
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.2
+0.1
-0.3
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
-0.3
-0.1
+0.3
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.3
+0.3
-0.7
-0.5
auxotrophy
YNB Glucose
-0.3
-0.2
+0.2
-0.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-1.1
-0.2
-0.2
+0.8
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.8
-0.2
-0.3
+1.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
+0.1
-0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.0
+0.0
+0.0
-0.1
auxotrophy
Dropout Complete
+0.3
-0.3
+0.0
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.0
-0.0
-0.1
growth on oleic acid
YNB Oleic Acid
+0.5
+0.3
+0.0
-0.9
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
+0.2
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
-0.3
-0.3
-0.0
+1.0
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
+0.1
+0.4
+0.5
growth on ypd
YPD
+1.4
+0.0
-0.1
+0.3
+0.0
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