Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 13385 and 13386 are separated by 157 nucleotides13386 and 13387 are separated by 70 nucleotides13387 and 13388 are separated by 326 nucleotides13388 and 13389 are separated by 190 nucleotides mRNA_5017: 13385 - K08963 mtnA methylthioribose-1-phosphate isomerase, at 1,557,007 to 1,558,590 13385 mRNA_5018: 13386 - Hypothetical Protein, at 1,558,748 to 1,560,542 13386 mRNA_5019: 13387 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1,560,613 to 1,563,320 13387 mRNA_5020: 13388 - K20178 VPS8 vacuolar protein sorting-associated protein 8, at 1,563,647 to 1,569,301 13388 mRNA_5021: 13389 - K14347 SLC10A7, P7 solute carrier family 10 (sodium/bile acid cotransporter), member 7, at 1,569,492 to 1,571,260 13389
Group Condition mRNA_5017 mRNA_5018 mRNA_5019 mRNA_5020 mRNA_5021
13385 13386 13387 13388 13389
facs on lipid accumulation Sorted Low BODIPY Gate -1.4 -0.1 -0.3 -1.4 +0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.7 -0.1 -0.3 -1.4 -0.3
facs on lipid accumulation Sorted No BODIPY Gate -1.5 -0.2 -0.3 -1.2 +0.8
auxotrophy YNB Glucose 75mM Arginine -0.7 -0.1 +0.2 -0.8 +0.4
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.7 -0.0 -0.2 -0.1 -0.1
growth on oleic acid YNB Glucose -0.1 +0.0 -0.2 -0.5 -0.0
growth on ricinoleic acid YNB Ricinoleic Acid -0.9 -0.2 +0.1 -0.3 +0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.7 -0.3 -0.1 +0.3 +0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.1 +0.3 +0.3 -0.7 -0.5
auxotrophy YNB Glucose -0.3 -0.2 +0.2 -0.3 +0.2
facs on lipid accumulation Sorted High BODIPY Gate -1.1 -0.2 -0.2 +0.8 +0.5
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.8 -0.2 -0.3 +1.0 +0.0
ypd buoyancy 40 hrs High Buoyancy -0.1 +0.1 +0.1 -0.2 -0.0
ypd buoyancy 40 hrs Low Buoyancy -0.2 +0.0 +0.0 +0.0 -0.1
auxotrophy Dropout Complete +0.3 -0.3 +0.0 -0.1 +0.0
ypd buoyancy 40 hrs Median Buoyancy +0.1 -0.1 +0.0 -0.0 -0.1
growth on oleic acid YNB Oleic Acid +0.5 +0.3 +0.0 -0.9 +0.1
auxotrophy YNB Glucose 75mM Methionine +0.2 -0.2 +0.2 -0.1 +0.2
growth on ricinoleic acid YNB Glucose -0.3 -0.3 -0.0 +1.0 +0.4
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 -0.1 +0.1 +0.4 +0.5
growth on ypd YPD +1.4 +0.0 -0.1 +0.3 +0.0
remove
mRNA_5017
plot
remove
mRNA_5018
plot
remove
mRNA_5019
remove
mRNA_5020
plot
remove
mRNA_5021
plot