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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13388 and 13389 are separated by 190 nucleotides
13389 and 13390 are separated by 241 nucleotides
13390 and 13391 are separated by 240 nucleotides
13391 and 13392 are separated by 491 nucleotides
mRNA_5020: 13388 - K20178 VPS8 vacuolar protein sorting-associated protein 8, at 1,563,647 to 1,569,301
13388
mRNA_5021: 13389 - K14347 SLC10A7, P7 solute carrier family 10 (sodium/bile acid cotransporter), member 7, at 1,569,492 to 1,571,260
13389
mRNA_5022: 13390 - Hypothetical Protein, at 1,571,502 to 1,572,574
13390
mRNA_5023: 13391 - K17866 DPH2 diphthamide biosynthesis protein 2, at 1,572,815 to 1,575,164
13391
mRNA_5024: 13392 - K11124 SMG6, EST1A protein SMG6, at 1,575,656 to 1,580,280
13392
Group
Condition
mRNA
_5020
mRNA
_5021
mRNA
_5022
mRNA
_5023
mRNA
_5024
13388
13389
13390
13391
13392
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.5
-0.1
+0.3
-2.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.0
-0.4
-0.3
-0.3
growth on oleic acid
YNB Glucose
-0.5
-0.0
-0.6
-0.3
+0.3
auxotrophy
YNB Glucose
-0.3
+0.2
-0.4
-0.8
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.4
-0.3
+0.2
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.4
+0.3
+0.6
-0.7
+0.2
growth on ypd
YPD
+0.3
+0.0
-0.5
-0.1
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.8
+0.4
-0.3
-0.4
+0.4
growth on oleic acid
YNB Oleic Acid
-0.9
+0.1
-0.2
-0.4
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.5
+0.0
-1.4
+0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
-0.0
+0.0
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-1.2
+0.8
+0.3
-0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.2
-0.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
+0.5
-0.2
-0.3
-1.1
auxotrophy
Dropout Complete
-0.1
+0.0
-0.5
-0.0
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
-0.4
+0.1
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.5
-0.1
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
+0.0
-0.1
-0.3
+0.4
growth on ricinoleic acid
YNB Glucose
+1.0
+0.4
-0.3
-0.5
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
+0.1
+0.5
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
+0.9
+0.1
+0.3
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