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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13392 and 13393 are separated by 433 nucleotides
13393 and 13394 are separated by 186 nucleotides
13394 and 13395 are separated by 544 nucleotides
13395 and 13396 are separated by 1103 nucleotides
mRNA_5024: 13392 - K11124 SMG6, EST1A protein SMG6, at 1,575,656 to 1,580,280
13392
mRNA_5025: 13393 - BLAST HECT-type ubiquitin ligase-interacting protein creD [..., at 1,580,714 to 1,583,108
13393
mRNA_5026: 13394 - K01698 hemB, ALAD porphobilinogen synthase, at 1,583,295 to 1,584,679
13394
mRNA_5027: 13395 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 1,585,224 to 1,587,309
13395
mRNA_5028: 13396 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 1,588,413 to 1,590,373
13396
Group
Condition
mRNA
_5024
mRNA
_5025
mRNA
_5026
mRNA
_5027
mRNA
_5028
13392
13393
13394
13395
13396
ypd buoyancy
40 hrs No Buoyancy Separation
-2.3
-0.3
N.D.
-0.8
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-1.1
+0.3
N.D.
-0.8
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
N.D.
-1.0
-0.1
auxotrophy
Dropout Complete
+0.4
-0.3
N.D.
-0.8
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.3
N.D.
-0.3
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.1
N.D.
-0.3
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.4
N.D.
-0.6
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.2
N.D.
-0.0
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.6
-0.1
N.D.
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.2
N.D.
-0.1
-0.0
growth on ypd
YPD
-0.7
+0.2
N.D.
+0.7
-0.3
auxotrophy
YNB Glucose
+0.3
-0.2
N.D.
-0.5
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.4
N.D.
+0.3
+0.1
growth on oleic acid
YNB Oleic Acid
+0.6
-0.2
N.D.
-0.5
+0.1
growth on oleic acid
YNB Glucose
+0.3
+0.0
N.D.
+0.2
-0.4
growth on ricinoleic acid
YNB Glucose
+0.7
-0.5
N.D.
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.2
N.D.
-0.5
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
-0.5
N.D.
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
N.D.
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.1
N.D.
+0.4
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.6
N.D.
+0.1
+0.5
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