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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13395 and 13396 are separated by 1103 nucleotides
13396 and 13397 are separated by 683 nucleotides
13397 and 13398 are separated by 103 nucleotides
13398 and 13399 are separated by 530 nucleotides
mRNA_5027: 13395 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 1,585,224 to 1,587,309
13395
mRNA_5028: 13396 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 1,588,413 to 1,590,373
13396
mRNA_5029: 13397 - HMMPfam-Ornithine decarboxylase antizyme-PF02100,SUPERFAMILY--SSF55729, at 1,591,057 to 1,592,630
13397
mRNA_5030: 13398 - K01889 FARSA, pheS phenylalanyl-tRNA synthetase alpha chain, at 1,592,734 to 1,594,516
13398
mRNA_5031: 13399 - HMMPfam-PAS fold-PF00989,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-PAS repeat profile.-PS50112,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF55785, at 1,595,047 to 1,597,304
13399
Group
Condition
mRNA
_5027
mRNA
_5028
mRNA
_5029
mRNA
_5030
mRNA
_5031
13395
13396
13397
13398
13399
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.1
-0.5
N.D.
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.5
+0.3
N.D.
-2.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.3
+0.2
N.D.
-2.2
growth on oleic acid
YNB Oleic Acid
-0.5
+0.1
-0.1
N.D.
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
-0.1
+0.1
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
-0.2
+0.0
-0.1
N.D.
-0.3
auxotrophy
Dropout Complete
-0.8
+0.1
+0.2
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.3
+0.1
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.6
+0.4
+0.1
N.D.
-0.3
auxotrophy
YNB Glucose
-0.5
+0.3
+0.1
N.D.
-0.4
growth on oleic acid
YNB Glucose
+0.2
-0.4
+0.0
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
+0.1
+0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.4
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.4
+0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
+0.1
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.4
-0.1
N.D.
+0.1
growth on ypd
YPD
+0.7
-0.3
-0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.2
-0.2
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.2
-0.0
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
+0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
+0.1
N.D.
+0.6
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