Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13396 and 13397 are separated by 683 nucleotides13397 and 13398 are separated by 103 nucleotides13398 and 13399 are separated by 530 nucleotides13399 and 13400 are separated by 502 nucleotides mRNA_5028: 13396 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 1,588,413 to 1,590,373 13396 mRNA_5029: 13397 - HMMPfam-Ornithine decarboxylase antizyme-PF02100,SUPERFAMILY--SSF55729, at 1,591,057 to 1,592,630 13397 mRNA_5030: 13398 - K01889 FARSA, pheS phenylalanyl-tRNA synthetase alpha chain, at 1,592,734 to 1,594,516 13398 mRNA_5031: 13399 - HMMPfam-PAS fold-PF00989,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-PAS repeat profile.-PS50112,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF55785, at 1,595,047 to 1,597,304 13399 mRNA_5032: 13400 - Hypothetical Protein, at 1,597,807 to 1,600,574 13400
Group Condition mRNA_5028 mRNA_5029 mRNA_5030 mRNA_5031 mRNA_5032
13396 13397 13398 13399 13400
ypd buoyancy 40 hrs No Buoyancy Separation -0.1 -0.5 N.D. -0.4 -1.7
growth on ricinoleic acid YNB Ricinoleic Acid +0.5 +0.3 N.D. -2.6 -0.3
growth on ricinoleic acid YNB Methylricinoleic Acid +0.3 +0.2 N.D. -2.2 +0.2
growth on oleic acid YNB Oleic Acid +0.1 -0.1 N.D. -0.7 -0.1
growth on ypd YPD -0.3 -0.1 N.D. -0.0 -0.2
growth on ricinoleic acid YNB Glucose +0.0 -0.1 N.D. -0.3 -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.4 +0.1 N.D. +0.1 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 -0.2 N.D. +0.4 +0.0
auxotrophy YNB Glucose +0.3 +0.1 N.D. -0.4 +0.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 +0.1 N.D. +0.0 +0.3
facs on lipid accumulation Sorted No BODIPY Gate -0.1 +0.1 N.D. +0.2 +0.1
growth on oleic acid YNB Glucose -0.4 +0.0 N.D. -0.2 +0.8
ypd buoyancy 40 hrs High Buoyancy +0.4 -0.1 N.D. +0.1 -0.1
ypd buoyancy 40 hrs Median Buoyancy +0.2 -0.0 N.D. -0.0 +0.2
ypd buoyancy 40 hrs Low Buoyancy +0.1 +0.1 N.D. +0.3 -0.1
auxotrophy Dropout Complete +0.1 +0.2 N.D. +0.0 +0.1
auxotrophy YNB Glucose 75mM Arginine +0.4 +0.1 N.D. -0.3 +0.3
auxotrophy YNB Glucose 75mM Methionine +0.4 +0.1 N.D. -0.2 +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 +0.1 N.D. -0.0 +0.7
facs on lipid accumulation Sorted High BODIPY Gate +0.1 +0.1 N.D. +0.3 +0.4
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 +0.1 N.D. +0.6 +0.3
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