Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
13396 and 13397 are separated by 683 nucleotides
13397 and 13398 are separated by 103 nucleotides
13398 and 13399 are separated by 530 nucleotides
13399 and 13400 are separated by 502 nucleotides
mRNA_5028: 13396 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 1,588,413 to 1,590,373
13396
mRNA_5029: 13397 - HMMPfam-Ornithine decarboxylase antizyme-PF02100,SUPERFAMILY--SSF55729, at 1,591,057 to 1,592,630
13397
mRNA_5030: 13398 - K01889 FARSA, pheS phenylalanyl-tRNA synthetase alpha chain, at 1,592,734 to 1,594,516
13398
mRNA_5031: 13399 - HMMPfam-PAS fold-PF00989,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-PAS repeat profile.-PS50112,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF55785, at 1,595,047 to 1,597,304
13399
mRNA_5032: 13400 - Hypothetical Protein, at 1,597,807 to 1,600,574
13400
Group
Condition
mRNA
_5028
mRNA
_5029
mRNA
_5030
mRNA
_5031
mRNA
_5032
13396
13397
13398
13399
13400
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.5
N.D.
-0.4
-1.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.3
N.D.
-2.6
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.2
N.D.
-2.2
+0.2
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
N.D.
-0.7
-0.1
growth on ypd
YPD
-0.3
-0.1
N.D.
-0.0
-0.2
growth on ricinoleic acid
YNB Glucose
+0.0
-0.1
N.D.
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.1
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.2
N.D.
+0.4
+0.0
auxotrophy
YNB Glucose
+0.3
+0.1
N.D.
-0.4
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.1
N.D.
+0.0
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
N.D.
+0.2
+0.1
growth on oleic acid
YNB Glucose
-0.4
+0.0
N.D.
-0.2
+0.8
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.1
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.0
N.D.
-0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
N.D.
+0.3
-0.1
auxotrophy
Dropout Complete
+0.1
+0.2
N.D.
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.1
N.D.
-0.3
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.1
N.D.
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.1
N.D.
-0.0
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
N.D.
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
N.D.
+0.6
+0.3
remove
mRNA_5028
plot
remove
mRNA_5029
plot
remove
mRNA_5030
remove
mRNA_5031
plot
remove
mRNA_5032
plot