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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13399 and 13400 are separated by 502 nucleotides
13400 and 13401 are separated by 893 nucleotides
13401 and 13402 are separated by 957 nucleotides
13402 and 13403 are separated by 522 nucleotides
mRNA_5031: 13399 - HMMPfam-PAS fold-PF00989,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-PAS repeat profile.-PS50112,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF55785, at 1,595,047 to 1,597,304
13399
mRNA_5032: 13400 - Hypothetical Protein, at 1,597,807 to 1,600,574
13400
mRNA_5033: 13401 - KOG4436 Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains), at 1,601,468 to 1,605,781
13401
mRNA_5034: 13402 - KOG4589 Cell division protein FtsJ, at 1,606,739 to 1,607,440
13402
mRNA_5035: 13403 - K11304 TIP60, KAT5, ESA1 histone acetyltransferase HTATIP, at 1,607,963 to 1,609,879
13403
Group
Condition
mRNA
_5031
mRNA
_5032
mRNA
_5033
mRNA
_5034
mRNA
_5035
13399
13400
13401
13402
13403
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.6
-0.3
-0.1
+0.6
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.2
+0.2
-0.5
+0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-1.7
+0.4
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
-0.7
-0.1
-0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
-0.0
-0.5
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
-0.0
-0.7
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
-0.0
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.3
-0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.0
-0.2
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.3
-0.1
-0.1
N.D.
auxotrophy
YNB Glucose
-0.4
+0.0
-0.0
+0.5
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.2
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
+0.1
-0.0
N.D.
auxotrophy
Dropout Complete
+0.0
+0.1
-0.0
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
+0.2
-0.2
N.D.
growth on ypd
YPD
-0.0
-0.2
+0.1
+0.6
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
+0.4
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.7
+0.2
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.4
+0.2
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.8
-0.3
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.3
+0.0
+0.1
N.D.
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