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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13401 and 13402 are separated by 957 nucleotides
13402 and 13403 are separated by 522 nucleotides
13403 and 13404 are separated by 206 nucleotides
13404 and 13405 are separated by 387 nucleotides
mRNA_5033: 13401 - KOG4436 Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains), at 1,601,468 to 1,605,781
13401
mRNA_5034: 13402 - KOG4589 Cell division protein FtsJ, at 1,606,739 to 1,607,440
13402
mRNA_5035: 13403 - K11304 TIP60, KAT5, ESA1 histone acetyltransferase HTATIP, at 1,607,963 to 1,609,879
13403
mRNA_5036: 13404 - Hypothetical Protein, at 1,610,086 to 1,610,551
13404
mRNA_5037: 13405 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 1,610,939 to 1,612,058
13405
Group
Condition
mRNA
_5033
mRNA
_5034
mRNA
_5035
mRNA
_5036
mRNA
_5037
13401
13402
13403
13404
13405
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.7
N.D.
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.3
N.D.
-0.0
-0.2
growth on ricinoleic acid
YNB Glucose
-0.5
+0.5
N.D.
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.2
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.3
N.D.
-0.4
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.4
N.D.
-0.2
+0.2
auxotrophy
Dropout Complete
-0.0
+0.2
N.D.
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose
-0.0
+0.5
N.D.
-0.1
-0.5
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
N.D.
-0.4
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
N.D.
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.2
N.D.
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.1
N.D.
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
N.D.
+0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
N.D.
-0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
N.D.
-0.1
+0.3
growth on oleic acid
YNB Glucose
-0.3
+0.6
N.D.
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
N.D.
-0.2
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.6
N.D.
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.1
N.D.
-0.1
+0.2
growth on ypd
YPD
+0.1
+0.6
N.D.
+0.2
+0.1
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