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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13402 and 13403 are separated by 522 nucleotides
13403 and 13404 are separated by 206 nucleotides
13404 and 13405 are separated by 387 nucleotides
13405 and 13406 are separated by 983 nucleotides
mRNA_5034: 13402 - KOG4589 Cell division protein FtsJ, at 1,606,739 to 1,607,440
13402
mRNA_5035: 13403 - K11304 TIP60, KAT5, ESA1 histone acetyltransferase HTATIP, at 1,607,963 to 1,609,879
13403
mRNA_5036: 13404 - Hypothetical Protein, at 1,610,086 to 1,610,551
13404
mRNA_5037: 13405 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 1,610,939 to 1,612,058
13405
mRNA_5038: 13406 - Hypothetical Protein, at 1,613,042 to 1,613,500
13406
Group
Condition
mRNA
_5034
mRNA
_5035
mRNA
_5036
mRNA
_5037
mRNA
_5038
13402
13403
13404
13405
13406
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
N.D.
-0.2
+0.2
-2.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.4
+0.0
-1.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-0.1
-0.1
-1.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.1
+0.2
-1.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
N.D.
-0.1
-0.0
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
-0.0
-0.2
-0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.1
-0.1
-1.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
-0.1
+0.1
-1.0
auxotrophy
Dropout Complete
+0.2
N.D.
+0.1
-0.3
-0.7
growth on ricinoleic acid
YNB Glucose
+0.5
N.D.
-0.1
-0.4
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
-0.1
+0.0
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
N.D.
-0.1
+0.2
-1.0
auxotrophy
YNB Glucose
+0.5
N.D.
-0.1
-0.5
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.2
+0.3
-0.0
growth on oleic acid
YNB Glucose
+0.6
N.D.
-0.2
+0.2
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
-0.1
+0.3
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
-0.0
+0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
-0.2
+0.6
+0.2
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
-0.4
+0.3
+0.4
growth on ypd
YPD
+0.6
N.D.
+0.2
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
+0.1
+0.3
+0.6
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