Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13405 and 13406 are separated by 983 nucleotides13406 and 13407 are separated by 762 nucleotides13407 and 13408 are separated by 91 nucleotides13408 and 13409 are separated by 246 nucleotides mRNA_5037: 13405 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 1,610,939 to 1,612,058 13405 mRNA_5038: 13406 - Hypothetical Protein, at 1,613,042 to 1,613,500 13406 mRNA_5039: 13407 - Hypothetical Protein, at 1,614,263 to 1,614,994 13407 mRNA_5040: 13408 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 1,615,086 to 1,617,129 13408 mRNA_5041: 13409 - K01077 E3.1.3.1, phoA, phoB alkaline phosphatase, at 1,617,376 to 1,619,999 13409
Group Condition mRNA_5037 mRNA_5038 mRNA_5039 mRNA_5040 mRNA_5041
13405 13406 13407 13408 13409
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 -2.3 -0.1 +0.1 +0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.0 -1.0 -1.0 +0.4 -0.1
growth on ricinoleic acid YNB Glucose -0.4 -0.7 -0.3 -0.2 -0.1
auxotrophy YNB Glucose 75mM Arginine -0.1 -1.2 -0.3 +0.1 +0.1
ypd buoyancy 40 hrs High Buoyancy +0.2 -1.5 -0.3 +0.2 -0.0
auxotrophy YNB Glucose 75mM Methionine -0.1 -1.0 -0.4 -0.0 +0.2
auxotrophy Dropout Complete -0.3 -0.7 -0.2 +0.1 +0.1
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 -1.0 -0.1 +0.2 +0.1
growth on oleic acid YNB Glucose +0.2 -0.7 -0.3 +0.2 -0.1
auxotrophy YNB Glucose -0.5 -0.1 -0.5 +0.2 +0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 -1.0 +0.4 +0.3 +0.2
ypd buoyancy 40 hrs Median Buoyancy +0.3 -0.0 +0.0 -0.1 +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.0 -0.5 +0.4 +0.3 +0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.0 -0.7 +0.5 +0.2 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 -0.7 +0.7 +0.4 +0.1
growth on oleic acid YNB Oleic Acid +0.3 +0.4 -0.3 -0.0 +0.1
ypd buoyancy 40 hrs Low Buoyancy +0.2 +0.2 +0.2 -0.1 +0.1
growth on ypd YPD +0.1 -0.1 +0.2 +0.4 +0.3
facs on lipid accumulation Sorted High BODIPY Gate +0.3 +0.0 +0.3 +0.9 +0.3
facs on lipid accumulation Sorted No BODIPY Gate +0.6 +0.2 +0.1 +0.7 +0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.3 +0.6 +0.6 +0.7 +0.4
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