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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13406 and 13407 are separated by 762 nucleotides
13407 and 13408 are separated by 91 nucleotides
13408 and 13409 are separated by 246 nucleotides
13409 and 13410 are separated by 186 nucleotides
mRNA_5038: 13406 - Hypothetical Protein, at 1,613,042 to 1,613,500
13406
mRNA_5039: 13407 - Hypothetical Protein, at 1,614,263 to 1,614,994
13407
mRNA_5040: 13408 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 1,615,086 to 1,617,129
13408
mRNA_5041: 13409 - K01077 E3.1.3.1, phoA, phoB alkaline phosphatase, at 1,617,376 to 1,619,999
13409
mRNA_5042: 13410 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 1,620,186 to 1,624,463
13410
Group
Condition
mRNA
_5038
mRNA
_5039
mRNA
_5040
mRNA
_5041
mRNA
_5042
13406
13407
13408
13409
13410
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-1.0
+0.4
-0.1
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.3
-0.1
+0.1
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-1.5
-0.3
+0.2
-0.0
-0.1
growth on ricinoleic acid
YNB Glucose
-0.7
-0.3
-0.2
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-1.2
-0.3
+0.1
+0.1
+0.4
growth on oleic acid
YNB Glucose
-0.7
-0.3
+0.2
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-1.0
-0.4
-0.0
+0.2
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
-0.1
+0.2
+0.1
+0.1
auxotrophy
Dropout Complete
-0.7
-0.2
+0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.0
+0.4
+0.3
+0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
-0.1
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
+0.4
-0.3
-0.0
+0.1
-0.1
auxotrophy
YNB Glucose
-0.1
-0.5
+0.2
+0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.2
-0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.7
+0.4
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.4
+0.3
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
+0.5
+0.2
+0.2
+0.1
growth on ypd
YPD
-0.1
+0.2
+0.4
+0.3
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
+0.7
+0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.3
+0.9
+0.3
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
+0.6
+0.7
+0.4
-0.4
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