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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13407 and 13408 are separated by 91 nucleotides
13408 and 13409 are separated by 246 nucleotides
13409 and 13410 are separated by 186 nucleotides
13410 and 13411 are separated by 334 nucleotides
mRNA_5039: 13407 - Hypothetical Protein, at 1,614,263 to 1,614,994
13407
mRNA_5040: 13408 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 1,615,086 to 1,617,129
13408
mRNA_5041: 13409 - K01077 E3.1.3.1, phoA, phoB alkaline phosphatase, at 1,617,376 to 1,619,999
13409
mRNA_5042: 13410 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 1,620,186 to 1,624,463
13410
mRNA_5043: 13411 - PIRSF--PIRSF022976, at 1,624,798 to 1,625,839
13411
Group
Condition
mRNA
_5039
mRNA
_5040
mRNA
_5041
mRNA
_5042
mRNA
_5043
13407
13408
13409
13410
13411
growth on ricinoleic acid
YNB Glucose
-0.3
-0.2
-0.1
-0.0
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
+0.4
-0.1
-0.6
+0.3
growth on oleic acid
YNB Glucose
-0.3
+0.2
-0.1
-0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
+0.1
+0.1
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.2
+0.1
+0.1
-0.6
growth on oleic acid
YNB Oleic Acid
-0.3
-0.0
+0.1
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.2
-0.0
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
+0.1
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
+0.1
-0.1
-0.0
auxotrophy
Dropout Complete
-0.2
+0.1
+0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.3
+0.0
+0.1
-0.5
auxotrophy
YNB Glucose
-0.5
+0.2
+0.3
+0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
+0.1
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.3
+0.2
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.0
+0.2
+0.5
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.7
+0.2
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.2
+0.2
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
+0.4
+0.1
-0.2
+0.1
growth on ypd
YPD
+0.2
+0.4
+0.3
-0.0
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.9
+0.3
-0.4
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
+0.7
+0.4
-0.4
+0.2
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