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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13410 and 13411 are separated by 334 nucleotides
13411 and 13412 are separated by 345 nucleotides
13412 and 13413 are separated by 435 nucleotides
13413 and 13414 are separated by 566 nucleotides
mRNA_5042: 13410 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 1,620,186 to 1,624,463
13410
mRNA_5043: 13411 - PIRSF--PIRSF022976, at 1,624,798 to 1,625,839
13411
mRNA_5044: 13412 - K04717 SGPP2 sphingosine-1-phosphate phosphotase 2, at 1,626,185 to 1,628,118
13412
mRNA_5045: 13413 - K01111 E3.1.3.68 2-deoxyglucose-6-phosphatase, at 1,628,554 to 1,629,804
13413
mRNA_5046: 13414 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 1,630,371 to 1,631,224
13414
Group
Condition
mRNA
_5042
mRNA
_5043
mRNA
_5044
mRNA
_5045
mRNA
_5046
13410
13411
13412
13413
13414
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.2
-0.8
+0.1
-0.1
growth on oleic acid
YNB Glucose
-0.1
-0.3
+0.2
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.5
+0.0
+0.3
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.2
-0.0
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.2
-0.5
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.0
-0.2
+0.4
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
-0.0
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.3
+0.1
+0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.6
-0.2
+0.7
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
+0.1
-0.2
+0.0
growth on ricinoleic acid
YNB Glucose
-0.0
-0.4
-0.1
+0.9
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.3
-0.3
+0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.0
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.1
+0.0
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.7
+0.3
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
+0.1
+0.2
-0.0
auxotrophy
YNB Glucose
+0.3
+0.0
-0.1
+0.7
-0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.1
+0.0
+0.6
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.1
-0.1
+0.5
-0.2
auxotrophy
Dropout Complete
+0.2
-0.1
+0.2
+0.6
+0.1
growth on ypd
YPD
-0.0
+0.4
-0.1
+0.7
+0.3
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