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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13411 and 13412 are separated by 345 nucleotides
13412 and 13413 are separated by 435 nucleotides
13413 and 13414 are separated by 566 nucleotides
13414 and 13415 are separated by 423 nucleotides
mRNA_5043: 13411 - PIRSF--PIRSF022976, at 1,624,798 to 1,625,839
13411
mRNA_5044: 13412 - K04717 SGPP2 sphingosine-1-phosphate phosphotase 2, at 1,626,185 to 1,628,118
13412
mRNA_5045: 13413 - K01111 E3.1.3.68 2-deoxyglucose-6-phosphatase, at 1,628,554 to 1,629,804
13413
mRNA_5046: 13414 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 1,630,371 to 1,631,224
13414
mRNA_5047: 13415 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 1,631,648 to 1,632,435
13415
Group
Condition
mRNA
_5043
mRNA
_5044
mRNA
_5045
mRNA
_5046
mRNA
_5047
13411
13412
13413
13414
13415
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.3
+0.1
+0.3
-1.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.0
+0.3
-0.6
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.2
+0.4
-0.3
-0.6
growth on oleic acid
YNB Glucose
-0.3
+0.2
-0.2
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.8
+0.1
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
-0.1
-0.3
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
-0.2
+0.0
-0.3
auxotrophy
YNB Glucose
+0.0
-0.1
+0.7
-0.6
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
-0.5
-0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.4
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.0
+0.6
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.0
+0.1
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
-0.1
+0.0
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.2
+0.7
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.1
+0.3
-0.2
+0.3
auxotrophy
Dropout Complete
-0.1
+0.2
+0.6
+0.1
-0.5
growth on ricinoleic acid
YNB Glucose
-0.4
-0.1
+0.9
-0.6
+0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
+0.5
-0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
+0.3
+0.6
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
+0.2
-0.0
+0.2
growth on ypd
YPD
+0.4
-0.1
+0.7
+0.3
+0.1
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