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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13414 and 13415 are separated by 423 nucleotides
13415 and 13416 are separated by 339 nucleotides
13416 and 13417 are separated by 192 nucleotides
13417 and 13418 are separated by 246 nucleotides
mRNA_5046: 13414 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 1,630,371 to 1,631,224
13414
mRNA_5047: 13415 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 1,631,648 to 1,632,435
13415
mRNA_5048: 13416 - HMMPfam-Animal haem peroxidase-PF03098,ProSiteProfiles-Animal heme peroxidase superfamily profile.-PS50292,SUPERFAMILY--SSF48113, at 1,632,775 to 1,633,418
13416
mRNA_5049: 13417 - HMMPfam-Cytochrome P450-PF00067,SUPERFAMILY--SSF48264, at 1,633,611 to 1,634,725
13417
mRNA_5050: 13418 - Hypothetical Protein, at 1,634,972 to 1,635,708
13418
Group
Condition
mRNA
_5046
mRNA
_5047
mRNA
_5048
mRNA
_5049
mRNA
_5050
13414
13415
13416
13417
13418
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-1.7
+0.6
N.D.
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.6
-0.4
N.D.
+0.1
auxotrophy
YNB Glucose
-0.6
-0.3
-0.1
N.D.
+0.1
auxotrophy
Dropout Complete
+0.1
-0.5
-0.3
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.3
+0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
-0.5
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.0
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.0
-0.7
N.D.
+0.1
growth on oleic acid
YNB Glucose
-0.3
-0.1
+0.1
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.4
+0.2
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
+0.0
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.3
+0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.2
-0.0
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
+0.6
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
+0.3
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.3
+0.3
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.6
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
-0.6
+0.6
+1.2
N.D.
-0.1
growth on ypd
YPD
+0.3
+0.1
+0.9
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.5
+1.2
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.4
+1.5
N.D.
-0.2
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