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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13415 and 13416 are separated by 339 nucleotides
13416 and 13417 are separated by 192 nucleotides
13417 and 13418 are separated by 246 nucleotides
13418 and 13419 are separated by 259 nucleotides
mRNA_5047: 13415 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 1,631,648 to 1,632,435
13415
mRNA_5048: 13416 - HMMPfam-Animal haem peroxidase-PF03098,ProSiteProfiles-Animal heme peroxidase superfamily profile.-PS50292,SUPERFAMILY--SSF48113, at 1,632,775 to 1,633,418
13416
mRNA_5049: 13417 - HMMPfam-Cytochrome P450-PF00067,SUPERFAMILY--SSF48264, at 1,633,611 to 1,634,725
13417
mRNA_5050: 13418 - Hypothetical Protein, at 1,634,972 to 1,635,708
13418
mRNA_5051: 13419 - KOG1382 Multiple inositol polyphosphate phosphatase, at 1,635,968 to 1,637,866
13419
Group
Condition
mRNA
_5047
mRNA
_5048
mRNA
_5049
mRNA
_5050
mRNA
_5051
13415
13416
13417
13418
13419
ypd buoyancy
40 hrs No Buoyancy Separation
-1.7
+0.6
N.D.
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.5
N.D.
-0.3
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.4
N.D.
+0.1
+0.1
auxotrophy
Dropout Complete
-0.5
-0.3
N.D.
-0.2
+0.1
growth on oleic acid
YNB Glucose
-0.1
+0.1
N.D.
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
N.D.
-0.1
-0.4
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
N.D.
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.0
N.D.
-0.1
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.7
N.D.
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
N.D.
-0.1
+0.3
auxotrophy
YNB Glucose
-0.3
-0.1
N.D.
+0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.3
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.2
N.D.
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.3
N.D.
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.3
N.D.
+0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.6
N.D.
-0.2
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.6
N.D.
+0.1
+0.0
growth on ypd
YPD
+0.1
+0.9
N.D.
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+1.2
N.D.
-0.1
-0.3
growth on ricinoleic acid
YNB Glucose
+0.6
+1.2
N.D.
-0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+1.5
N.D.
-0.2
-0.2
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