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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13416 and 13417 are separated by 192 nucleotides
13417 and 13418 are separated by 246 nucleotides
13418 and 13419 are separated by 259 nucleotides
13419 and 13420 are separated by 184 nucleotides
mRNA_5048: 13416 - HMMPfam-Animal haem peroxidase-PF03098,ProSiteProfiles-Animal heme peroxidase superfamily profile.-PS50292,SUPERFAMILY--SSF48113, at 1,632,775 to 1,633,418
13416
mRNA_5049: 13417 - HMMPfam-Cytochrome P450-PF00067,SUPERFAMILY--SSF48264, at 1,633,611 to 1,634,725
13417
mRNA_5050: 13418 - Hypothetical Protein, at 1,634,972 to 1,635,708
13418
mRNA_5051: 13419 - KOG1382 Multiple inositol polyphosphate phosphatase, at 1,635,968 to 1,637,866
13419
mRNA_5052: 13420 - Hypothetical Protein, at 1,638,051 to 1,638,624
13420
Group
Condition
mRNA
_5048
mRNA
_5049
mRNA
_5050
mRNA
_5051
mRNA
_5052
13416
13417
13418
13419
13420
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.1
-0.4
-1.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
N.D.
-0.3
-0.5
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
-0.1
-0.5
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
N.D.
-0.2
+0.6
-1.9
ypd buoyancy
40 hrs High Buoyancy
-0.7
N.D.
+0.1
+0.3
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
+0.3
+0.3
-1.1
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.2
-0.3
+0.3
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
-0.2
-0.3
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
N.D.
+0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
N.D.
+0.2
-0.2
-0.3
auxotrophy
Dropout Complete
-0.3
N.D.
-0.2
+0.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
+0.0
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.1
+0.3
+0.2
auxotrophy
YNB Glucose
-0.1
N.D.
+0.1
+0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
-0.1
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
N.D.
-0.4
-0.1
+0.5
growth on ypd
YPD
+0.9
N.D.
-0.0
+0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.2
N.D.
-0.1
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
+1.2
N.D.
-0.1
-0.4
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.6
N.D.
+0.1
+0.0
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.5
N.D.
-0.2
-0.2
+0.4
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