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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13421 and 13422 are separated by 575 nucleotides
13422 and 13423 are separated by 559 nucleotides
13423 and 13424 are separated by 817 nucleotides
13424 and 13425 are separated by 782 nucleotides
mRNA_5053: 13421 - Hypothetical Protein, at 1,638,974 to 1,640,272
13421
mRNA_5054: 13422 - Hypothetical Protein, at 1,640,848 to 1,641,700
13422
mRNA_5055: 13423 - KOG1289 Amino acid transporters, at 1,642,260 to 1,644,737
13423
mRNA_5056: 13424 - K02137 ATPeF0O, ATP5O, ATP5 F-type H+-transporting ATPase subunit O, at 1,645,555 to 1,646,643
13424
mRNA_5057: 13425 - K03252 EIF3C translation initiation factor 3 subunit C, at 1,647,426 to 1,650,006
13425
Group
Condition
mRNA
_5053
mRNA
_5054
mRNA
_5055
mRNA
_5056
mRNA
_5057
13421
13422
13423
13424
13425
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
-1.2
-0.5
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.3
-0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
-0.6
+0.2
N.D.
N.D.
growth on ypd
YPD
+0.5
-0.7
-0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.2
-0.3
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.4
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.1
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.0
-0.1
N.D.
N.D.
auxotrophy
Dropout Complete
-0.0
-0.2
+0.5
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.0
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.5
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.0
+0.6
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.6
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.8
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.5
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.4
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.6
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.5
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose
-0.1
+0.2
+0.8
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.5
+0.7
N.D.
N.D.
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