Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 13425 and 13426 are separated by 218 nucleotides13426 and 13427 are separated by 199 nucleotides13427 and 13428 are separated by 245 nucleotides13428 and 13429 are separated by 192 nucleotides mRNA_5057: 13425 - K03252 EIF3C translation initiation factor 3 subunit C, at 1,647,426 to 1,650,006 13425 mRNA_5058: 13426 - K07249 E1.2.1.36 retinal dehydrogenase, at 1,650,225 to 1,652,548 13426 mRNA_5059: 13427 - KOG0022 Alcohol dehydrogenase, class III, at 1,652,748 to 1,654,435 13427 mRNA_5060: 13428 - HMMPfam-Glycosyl transferase family 2-PF00535,HMMPfam-Glycosyl transferase family 8-PF01501,HMMPfam-Glycosyl transferase 4-like domain-PF13579,SUPERFAMILY--SSF53448,SUPERFAMILY--SSF53756, at 1,654,681 to 1,660,965 13428 mRNA_5061: 13429 - K11414 SIRT4, SIR2L4 NAD-dependent deacetylase sirtuin 4, at 1,661,158 to 1,662,498 13429
Group Condition mRNA_5057 mRNA_5058 mRNA_5059 mRNA_5060 mRNA_5061
13425 13426 13427 13428 13429
growth on ricinoleic acid YNB Ricinoleic Acid N.D. -2.8 -0.3 +0.2 -0.2
growth on ricinoleic acid YNB Glucose N.D. -0.6 -0.5 +0.0 -0.6
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. -1.1 -0.3 +0.2 -0.5
facs on lipid accumulation Sorted No BODIPY Gate N.D. -0.7 +0.3 -0.7 -0.3
growth on oleic acid YNB Oleic Acid N.D. -1.2 -0.3 -0.0 +0.2
auxotrophy YNB Glucose N.D. -0.9 -0.2 -0.3 +0.0
facs on lipid accumulation Sorted High BODIPY Gate N.D. -0.6 -0.1 -0.3 -0.3
auxotrophy YNB Glucose 75mM Arginine N.D. -0.9 -0.1 -0.3 +0.1
ypd buoyancy 40 hrs Low Buoyancy N.D. -0.4 -0.3 -0.3 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate N.D. -0.4 +0.3 -0.7 -0.3
auxotrophy YNB Glucose 75mM Methionine N.D. -0.6 -0.1 -0.2 -0.0
auxotrophy Dropout Complete N.D. -0.5 -0.1 -0.3 -0.1
ypd buoyancy 40 hrs High Buoyancy N.D. +0.0 -0.2 -0.4 -0.1
growth on oleic acid YNB Glucose N.D. -0.6 -0.0 +0.2 +0.0
ypd buoyancy 40 hrs Median Buoyancy N.D. -0.2 -0.0 -0.3 +0.1
ypd buoyancy 40 hrs No Buoyancy Separation N.D. -0.1 +0.3 -0.7 +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. -0.5 -0.0 +0.1 +0.4
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. -0.1 +0.3 -0.4 +0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. -0.1 -0.0 +0.3 -0.0
growth on ypd YPD N.D. -0.0 +0.3 +0.1 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. +0.4 -0.1 +0.0 +0.3
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