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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13427 and 13428 are separated by 245 nucleotides
13428 and 13429 are separated by 192 nucleotides
13429 and 13430 are separated by 68 nucleotides
13430 and 13431 are separated by 308 nucleotides
mRNA_5059: 13427 - KOG0022 Alcohol dehydrogenase, class III, at 1,652,748 to 1,654,435
13427
mRNA_5060: 13428 - HMMPfam-Glycosyl transferase family 2-PF00535,HMMPfam-Glycosyl transferase family 8-PF01501,HMMPfam-Glycosyl transferase 4-like domain-PF13579,SUPERFAMILY--SSF53448,SUPERFAMILY--SSF53756, at 1,654,681 to 1,660,965
13428
mRNA_5061: 13429 - K11414 SIRT4, SIR2L4 NAD-dependent deacetylase sirtuin 4, at 1,661,158 to 1,662,498
13429
mRNA_5062: 13430 - HMMPfam-Zinc-binding-PF12907,SUPERFAMILY--SSF118359, at 1,662,567 to 1,663,555
13430
mRNA_5063: 13431 - K10301 FBXO21 F-box protein 21, at 1,663,864 to 1,665,707
13431
Group
Condition
mRNA
_5059
mRNA
_5060
mRNA
_5061
mRNA
_5062
mRNA
_5063
13427
13428
13429
13430
13431
growth on ricinoleic acid
YNB Glucose
-0.5
+0.0
-0.6
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.4
-0.1
+0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.7
-0.3
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.3
-0.3
+0.1
-0.0
auxotrophy
Dropout Complete
-0.1
-0.3
-0.1
-0.2
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.7
+0.2
+0.3
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.7
-0.3
+0.1
+0.0
auxotrophy
YNB Glucose
-0.2
-0.3
+0.0
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.0
+0.2
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
-0.0
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.3
-0.1
+0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.3
+0.1
+0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.2
-0.2
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
+0.1
-0.0
+0.2
growth on oleic acid
YNB Glucose
-0.0
+0.2
+0.0
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.2
-0.5
+0.1
+0.5
growth on ypd
YPD
+0.3
+0.1
+0.1
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.4
+0.4
+0.6
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.0
+0.3
+0.6
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.3
-0.0
+0.5
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.1
+0.4
+0.4
+0.4
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