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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13430 and 13431 are separated by 308 nucleotides
13431 and 13432 are separated by 247 nucleotides
13432 and 13433 are separated by 214 nucleotides
13433 and 13434 are separated by 171 nucleotides
mRNA_5062: 13430 - HMMPfam-Zinc-binding-PF12907,SUPERFAMILY--SSF118359, at 1,662,567 to 1,663,555
13430
mRNA_5063: 13431 - K10301 FBXO21 F-box protein 21, at 1,663,864 to 1,665,707
13431
mRNA_5064: 13432 - K00286 proC pyrroline-5-carboxylate reductase, at 1,665,955 to 1,667,428
13432
mRNA_5065: 13433 - HMMPfam-Mitotic checkpoint regulator, MAD2B-interacting-PF10253, at 1,667,643 to 1,669,072
13433
mRNA_5066: 13434 - KOG3170 Conserved phosducin-like protein, at 1,669,244 to 1,670,342
13434
Group
Condition
mRNA
_5062
mRNA
_5063
mRNA
_5064
mRNA
_5065
mRNA
_5066
13430
13431
13432
13433
13434
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.8
N.D.
-1.1
-0.7
auxotrophy
Dropout Complete
-0.2
+0.0
N.D.
-1.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
N.D.
-0.8
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.0
N.D.
-1.1
-0.3
auxotrophy
YNB Glucose
-0.0
+0.1
N.D.
-1.4
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.0
N.D.
-0.6
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
N.D.
-1.0
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
N.D.
-0.7
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.1
N.D.
-1.4
+0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
N.D.
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.2
N.D.
-1.0
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.3
N.D.
+0.3
-0.0
growth on oleic acid
YNB Glucose
-0.2
-0.1
N.D.
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.1
N.D.
-0.8
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.2
N.D.
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.4
N.D.
-0.9
+0.7
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
N.D.
+0.4
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.1
N.D.
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.4
N.D.
-1.0
+0.9
growth on ypd
YPD
-0.0
+0.1
N.D.
+0.7
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.5
N.D.
+0.0
+0.7
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