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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13432 and 13433 are separated by 214 nucleotides
13433 and 13434 are separated by 171 nucleotides
13434 and 13435 are separated by 750 nucleotides
13435 and 13436 are separated by 476 nucleotides
mRNA_5064: 13432 - K00286 proC pyrroline-5-carboxylate reductase, at 1,665,955 to 1,667,428
13432
mRNA_5065: 13433 - HMMPfam-Mitotic checkpoint regulator, MAD2B-interacting-PF10253, at 1,667,643 to 1,669,072
13433
mRNA_5066: 13434 - KOG3170 Conserved phosducin-like protein, at 1,669,244 to 1,670,342
13434
mRNA_5067: 13435 - Hypothetical Protein, at 1,671,093 to 1,672,541
13435
mRNA_5068: 13436 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,673,018 to 1,675,437
13436
Group
Condition
mRNA
_5064
mRNA
_5065
mRNA
_5066
mRNA
_5067
mRNA
_5068
13432
13433
13434
13435
13436
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.1
-0.7
-1.4
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.6
-0.2
-2.0
+0.2
auxotrophy
Dropout Complete
N.D.
-1.2
-0.1
-0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.8
-0.7
-0.2
+0.2
auxotrophy
YNB Glucose
N.D.
-1.4
+0.2
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.1
-0.3
+0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-1.4
+0.7
-0.0
-0.5
growth on ricinoleic acid
YNB Glucose
N.D.
-0.7
+0.2
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-1.0
+0.2
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
+0.1
-0.5
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.0
-0.5
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.1
+0.4
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-1.0
+0.4
+0.8
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-1.0
+0.9
+0.5
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.4
-0.1
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.9
+0.7
+0.6
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
+0.7
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.8
+0.4
+1.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
-0.0
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.4
+0.4
+0.1
-0.2
growth on ypd
YPD
N.D.
+0.7
+0.3
-0.3
+0.1
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