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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13434 and 13435 are separated by 750 nucleotides
13435 and 13436 are separated by 476 nucleotides
13436 and 13437 are separated by 600 nucleotides
13437 and 13438 are separated by 233 nucleotides
mRNA_5066: 13434 - KOG3170 Conserved phosducin-like protein, at 1,669,244 to 1,670,342
13434
mRNA_5067: 13435 - Hypothetical Protein, at 1,671,093 to 1,672,541
13435
mRNA_5068: 13436 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,673,018 to 1,675,437
13436
mRNA_5069: 13437 - KOG2317 Putative translation initiation inhibitor UK114/IBM1, at 1,676,038 to 1,676,601
13437
mRNA_5070: 13438 - KOG3346 Phosphatidylethanolamine binding protein, at 1,676,835 to 1,677,879
13438
Group
Condition
mRNA
_5066
mRNA
_5067
mRNA
_5068
mRNA
_5069
mRNA
_5070
13434
13435
13436
13437
13438
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-2.0
+0.2
-1.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-1.4
+0.0
-0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.5
-0.1
-0.7
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
-0.2
+0.2
-0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.0
+0.1
-0.8
N.D.
auxotrophy
Dropout Complete
-0.1
-0.2
-0.3
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
-0.2
-0.4
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.5
-0.1
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.3
+0.1
+0.0
N.D.
auxotrophy
YNB Glucose
+0.2
-0.1
-0.1
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.2
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
+0.1
-0.3
N.D.
growth on oleic acid
YNB Glucose
+0.4
-0.1
-0.4
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
-0.0
-0.5
+0.1
N.D.
growth on ypd
YPD
+0.3
-0.3
+0.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.9
+0.5
-0.3
-0.6
N.D.
growth on oleic acid
YNB Oleic Acid
+0.4
+0.1
-0.2
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
+0.1
-0.5
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.8
-0.2
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
+0.6
-0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+1.0
-0.2
-0.3
N.D.
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