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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13438 and 13439 are separated by 318 nucleotides
13439 and 13440 are separated by 1244 nucleotides
13440 and 13441 are separated by 2076 nucleotides
13441 and 13442 are separated by 209 nucleotides
mRNA_5070: 13438 - KOG3346 Phosphatidylethanolamine binding protein, at 1,676,835 to 1,677,879
13438
mRNA_5071: 13439 - KOG3038 Histone acetyltransferase SAGA associated factor SGF29, at 1,678,198 to 1,679,552
13439
mRNA_5072: 13440 - K04534 GNAO, G-ALPHA-O guanine nucleotide-binding protein G(o) subunit alpha, at 1,680,797 to 1,682,258
13440
mRNA_5073: 13441 - K12843 PRPF3, PRP3 U4/U6 small nuclear ribonucleoprotein PRP3, at 1,684,335 to 1,686,538
13441
mRNA_5074: 13442 - KOG1426 FOG RCC1 domain, at 1,686,748 to 1,688,020
13442
Group
Condition
mRNA
_5070
mRNA
_5071
mRNA
_5072
mRNA
_5073
mRNA
_5074
13438
13439
13440
13441
13442
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-1.8
+0.1
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.4
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.5
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
-0.3
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
-0.1
N.D.
+0.0
growth on ypd
YPD
N.D.
+0.1
-0.1
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
+0.3
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.7
-0.1
N.D.
-0.3
growth on oleic acid
YNB Glucose
N.D.
+0.3
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.6
-0.0
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
+0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.5
+0.1
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+1.2
-0.4
N.D.
-0.2
auxotrophy
YNB Glucose
N.D.
+0.3
+0.2
N.D.
+0.3
auxotrophy
Dropout Complete
N.D.
+0.6
+0.3
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.6
+0.4
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.6
+0.5
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.5
+0.6
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
+0.7
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+1.0
+0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+1.6
+0.2
N.D.
+0.2
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