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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13441 and 13442 are separated by 209 nucleotides
13442 and 13443 are separated by 195 nucleotides
13443 and 13444 are separated by 176 nucleotides
13444 and 13445 are separated by 289 nucleotides
mRNA_5073: 13441 - K12843 PRPF3, PRP3 U4/U6 small nuclear ribonucleoprotein PRP3, at 1,684,335 to 1,686,538
13441
mRNA_5074: 13442 - KOG1426 FOG RCC1 domain, at 1,686,748 to 1,688,020
13442
mRNA_5075: 13443 - K00958 sat, met3 sulfate adenylyltransferase, at 1,688,216 to 1,690,274
13443
mRNA_5076: 13444 - K00588 E2.1.1.104 caffeoyl-CoA O-methyltransferase, at 1,690,451 to 1,691,745
13444
mRNA_5077: 13445 - KOG1663 O-methyltransferase, at 1,692,035 to 1,693,349
13445
Group
Condition
mRNA
_5073
mRNA
_5074
mRNA
_5075
mRNA
_5076
mRNA
_5077
13441
13442
13443
13444
13445
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
-2.3
+0.0
-1.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-1.3
-0.8
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
-1.4
-0.1
-1.5
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
-2.6
-0.0
-0.2
auxotrophy
YNB Glucose
N.D.
+0.3
-2.4
+0.0
-0.6
growth on oleic acid
YNB Glucose
N.D.
+0.1
-2.2
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-2.1
-0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.6
-0.4
-1.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
-1.9
-0.0
-0.5
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.2
-0.5
-1.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.2
-0.0
-0.9
growth on ypd
YPD
N.D.
-0.0
-0.0
-0.3
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-3.0
+0.2
+2.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.3
-0.7
+0.1
auxotrophy
Dropout Complete
N.D.
+0.0
-0.1
-0.2
-0.8
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.3
+0.3
+0.1
-1.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.1
+0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.2
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
-1.5
+0.2
+2.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
-0.5
+0.4
+1.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
+1.1
+0.4
+0.1
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