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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13446 and 13447 are separated by 148 nucleotides
13447 and 13448 are separated by 204 nucleotides
13448 and 13449 are separated by 204 nucleotides
13449 and 13450 are separated by 706 nucleotides
mRNA_5078: 13446 - K01870 IARS, ileS isoleucyl-tRNA synthetase, at 1,694,035 to 1,697,967
13446
mRNA_5079: 13447 - HMMPfam-TRAF-type zinc finger-PF02176,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 1,698,116 to 1,699,686
13447
mRNA_5080: 13448 - K12486 SMAP stromal membrane-associated protein, at 1,699,891 to 1,701,497
13448
mRNA_5081: 13449 - K10396 KIF5 kinesin family member 5, at 1,701,702 to 1,705,465
13449
mRNA_5082: 13450 - K10696 BRE1 E3 ubiquitin-protein ligase BRE1, at 1,706,172 to 1,709,244
13450
Group
Condition
mRNA
_5078
mRNA
_5079
mRNA
_5080
mRNA
_5081
mRNA
_5082
13446
13447
13448
13449
13450
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
-3.5
-0.3
-2.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
-1.6
-0.0
-2.7
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.7
-0.4
-0.1
-1.9
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-1.1
-0.1
-0.2
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-0.2
-0.2
-1.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.4
-0.8
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.7
-0.3
-0.0
auxotrophy
YNB Glucose
N.D.
-0.4
+0.1
-0.4
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.0
+0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
-0.0
-0.1
-0.7
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
-0.5
-0.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
+0.4
+0.3
-0.6
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.6
-0.5
-0.3
+0.3
auxotrophy
Dropout Complete
N.D.
-0.1
+0.3
+0.2
-0.3
growth on ypd
YPD
N.D.
-0.4
+0.1
-0.1
+0.6
growth on oleic acid
YNB Glucose
N.D.
+0.4
-0.1
-0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
+0.3
+0.5
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
+1.2
-0.6
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+0.5
-0.6
+1.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
+0.9
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+1.6
-0.3
-0.2
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