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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13463 and 13464 are separated by 1187 nucleotides
13464 and 13465 are separated by 297 nucleotides
13465 and 13466 are separated by 882 nucleotides
13466 and 13467 are separated by 847 nucleotides
mRNA_5095: 13463 - K03106 SRP54, ffh signal recognition particle subunit SRP54, at 1,736,291 to 1,738,860
13463
mRNA_5096: 13464 - K11292 SUPT6H, SPT6 transcription elongation factor SPT6, at 1,740,048 to 1,744,775
13464
mRNA_5097: 13465 - Hypothetical Protein, at 1,745,073 to 1,746,754
13465
mRNA_5098: 13466 - K08065 NFYB nuclear transcription Y subunit beta, at 1,747,637 to 1,748,369
13466
mRNA_5099: 13467 - Hypothetical Protein, at 1,749,217 to 1,750,028
13467
Group
Condition
mRNA
_5095
mRNA
_5096
mRNA
_5097
mRNA
_5098
mRNA
_5099
13463
13464
13465
13466
13467
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.6
-0.5
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.2
-0.5
+0.1
growth on ypd
YPD
N.D.
N.D.
+0.1
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
-0.5
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
-0.4
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.4
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.2
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.3
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.3
+0.1
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.1
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.1
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.3
+0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.0
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
+0.3
-0.0
auxotrophy
YNB Glucose
N.D.
N.D.
-0.2
+0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
+0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.1
+0.4
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.0
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.0
+0.6
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
+1.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.3
+1.6
+0.3
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