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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13469 and 13470 are separated by 928 nucleotides
13470 and 13471 are separated by 789 nucleotides
13471 and 13472 are separated by 729 nucleotides
13472 and 13473 are separated by 724 nucleotides
mRNA_5101: 13469 - K12669 OST3, OST6 oligosaccharyltransferase complex subunit gamma, at 1,751,358 to 1,752,700
13469
mRNA_5102: 13470 - KOG0619 FOG Leucine rich repeat, at 1,753,629 to 1,757,881
13470
mRNA_5103: 13471 - K03099 SOS son of sevenless, at 1,758,671 to 1,763,554
13471
mRNA_5104: 13472 - Hypothetical Protein, at 1,764,284 to 1,764,496
13472
mRNA_5105: 13473 - HMMPfam-Frequency clock protein-PF09421, at 1,765,221 to 1,768,687
13473
Group
Condition
mRNA
_5101
mRNA
_5102
mRNA
_5103
mRNA
_5104
mRNA
_5105
13469
13470
13471
13472
13473
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.3
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-1.0
+0.2
-0.0
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.3
-0.0
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
+0.0
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
+0.1
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
+0.1
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.4
-0.1
N.D.
+0.5
growth on ypd
YPD
-0.2
+0.1
+0.3
N.D.
+0.3
growth on oleic acid
YNB Glucose
-0.6
+0.9
+0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
-0.3
+0.9
-0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.6
+0.1
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.0
-0.1
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.7
+0.2
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.9
+0.3
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.5
+0.1
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.7
+0.2
N.D.
-0.0
auxotrophy
Dropout Complete
+0.3
+0.7
+0.2
N.D.
+0.2
auxotrophy
YNB Glucose
+0.3
+0.8
+0.2
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.5
+0.9
+0.0
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+1.8
-0.0
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+1.8
+0.2
N.D.
+0.0
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