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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13470 and 13471 are separated by 789 nucleotides
13471 and 13472 are separated by 729 nucleotides
13472 and 13473 are separated by 724 nucleotides
13473 and 13474 are separated by 627 nucleotides
mRNA_5102: 13470 - KOG0619 FOG Leucine rich repeat, at 1,753,629 to 1,757,881
13470
mRNA_5103: 13471 - K03099 SOS son of sevenless, at 1,758,671 to 1,763,554
13471
mRNA_5104: 13472 - Hypothetical Protein, at 1,764,284 to 1,764,496
13472
mRNA_5105: 13473 - HMMPfam-Frequency clock protein-PF09421, at 1,765,221 to 1,768,687
13473
mRNA_5106: 13474 - K12819 SLU7 pre-mRNA-processing factor SLU7, at 1,769,315 to 1,772,134
13474
Group
Condition
mRNA
_5102
mRNA
_5103
mRNA
_5104
mRNA
_5105
mRNA
_5106
13470
13471
13472
13473
13474
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.1
N.D.
+0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.1
N.D.
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.0
N.D.
-0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.1
N.D.
+0.5
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
N.D.
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.1
N.D.
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
N.D.
-0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
N.D.
+0.2
-0.0
growth on ypd
YPD
+0.1
+0.3
N.D.
+0.3
-0.2
growth on ricinoleic acid
YNB Glucose
+0.9
-0.0
N.D.
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.0
N.D.
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.1
N.D.
+0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
+0.2
N.D.
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.7
+0.2
N.D.
-0.0
-0.3
growth on oleic acid
YNB Oleic Acid
+0.9
+0.0
N.D.
-0.0
-0.2
auxotrophy
YNB Glucose
+0.8
+0.2
N.D.
+0.1
-0.1
auxotrophy
Dropout Complete
+0.7
+0.2
N.D.
+0.2
-0.0
growth on oleic acid
YNB Glucose
+0.9
+0.0
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.9
+0.3
N.D.
+0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.8
-0.0
N.D.
+0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.8
+0.2
N.D.
+0.0
-0.0
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