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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13474 and 13475 are separated by 176 nucleotides
13475 and 13476 are separated by 147 nucleotides
13476 and 13477 are separated by 383 nucleotides
13477 and 13478 are separated by 262 nucleotides
mRNA_5106: 13474 - K12819 SLU7 pre-mRNA-processing factor SLU7, at 1,769,315 to 1,772,134
13474
mRNA_5107: 13475 - K03130 TAF5 transcription initiation factor TFIID subunit 5, at 1,772,311 to 1,779,712
13475
mRNA_5108: 13476 - BLAST V175_0103_1006-like protein [Amanita sp. 'sp-jack1'], at 1,779,860 to 1,781,501
13476
mRNA_5109: 13477 - K17605 PPP2R4, PTPA serine/threonine-protein phosphatase 2A activator, at 1,781,885 to 1,783,353
13477
mRNA_5110: 13478 - HMMPfam-Phosphotyrosyl phosphate activator (PTPA) protein-PF03095,SUPERFAMILY--SSF140984, at 1,783,616 to 1,785,108
13478
Group
Condition
mRNA
_5106
mRNA
_5107
mRNA
_5108
mRNA
_5109
mRNA
_5110
13474
13475
13476
13477
13478
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.7
-1.1
N.D.
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.7
-1.0
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.7
-0.5
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
-0.2
-0.8
-0.1
N.D.
-0.5
growth on oleic acid
YNB Oleic Acid
-0.2
-0.4
-0.7
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.6
-0.7
N.D.
-0.2
auxotrophy
YNB Glucose
-0.1
-0.8
-0.0
N.D.
-0.2
growth on oleic acid
YNB Glucose
+0.2
-0.6
-0.3
N.D.
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
-1.2
N.D.
-0.0
auxotrophy
Dropout Complete
-0.0
-0.9
+0.1
N.D.
-0.2
growth on ypd
YPD
-0.2
-0.2
+0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
+0.5
N.D.
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
-0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
+0.6
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.2
+0.9
N.D.
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.3
-0.0
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.8
+1.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
+0.4
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
-0.1
N.D.
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.4
+0.4
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.2
+0.5
N.D.
+0.3
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