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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13475 and 13476 are separated by 147 nucleotides
13476 and 13477 are separated by 383 nucleotides
13477 and 13478 are separated by 262 nucleotides
13478 and 13479 are separated by 263 nucleotides
mRNA_5107: 13475 - K03130 TAF5 transcription initiation factor TFIID subunit 5, at 1,772,311 to 1,779,712
13475
mRNA_5108: 13476 - BLAST V175_0103_1006-like protein [Amanita sp. 'sp-jack1'], at 1,779,860 to 1,781,501
13476
mRNA_5109: 13477 - K17605 PPP2R4, PTPA serine/threonine-protein phosphatase 2A activator, at 1,781,885 to 1,783,353
13477
mRNA_5110: 13478 - HMMPfam-Phosphotyrosyl phosphate activator (PTPA) protein-PF03095,SUPERFAMILY--SSF140984, at 1,783,616 to 1,785,108
13478
mRNA_5111: 13479 - K19881 BUD7, BCH1 Chs5-Arf1p-binding protein BUD7/BCH1, at 1,785,372 to 1,788,381
13479
Group
Condition
mRNA
_5107
mRNA
_5108
mRNA
_5109
mRNA
_5110
mRNA
_5111
13475
13476
13477
13478
13479
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-1.1
N.D.
-0.5
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-1.2
N.D.
-0.0
-1.0
auxotrophy
YNB Glucose 75mM Arginine
-0.7
-0.5
N.D.
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
-0.8
-0.1
N.D.
-0.5
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
-1.0
N.D.
-0.3
+0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.6
-0.7
N.D.
-0.2
+0.3
growth on ypd
YPD
-0.2
+0.0
N.D.
-0.1
-0.6
growth on oleic acid
YNB Oleic Acid
-0.4
-0.7
N.D.
-0.3
+0.7
growth on oleic acid
YNB Glucose
-0.6
-0.3
N.D.
-0.4
+0.7
auxotrophy
YNB Glucose
-0.8
-0.0
N.D.
-0.2
+0.5
auxotrophy
Dropout Complete
-0.9
+0.1
N.D.
-0.2
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.0
N.D.
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.9
N.D.
-0.5
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.4
N.D.
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.5
N.D.
-0.5
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
N.D.
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.6
N.D.
-0.4
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
+1.3
N.D.
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.4
N.D.
-0.1
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.5
N.D.
+0.3
+0.0
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