Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
13476 and 13477 are separated by 383 nucleotides
13477 and 13478 are separated by 262 nucleotides
13478 and 13479 are separated by 263 nucleotides
13479 and 13480 are separated by 765 nucleotides
mRNA_5108: 13476 - BLAST V175_0103_1006-like protein [Amanita sp. 'sp-jack1'], at 1,779,860 to 1,781,501
13476
mRNA_5109: 13477 - K17605 PPP2R4, PTPA serine/threonine-protein phosphatase 2A activator, at 1,781,885 to 1,783,353
13477
mRNA_5110: 13478 - HMMPfam-Phosphotyrosyl phosphate activator (PTPA) protein-PF03095,SUPERFAMILY--SSF140984, at 1,783,616 to 1,785,108
13478
mRNA_5111: 13479 - K19881 BUD7, BCH1 Chs5-Arf1p-binding protein BUD7/BCH1, at 1,785,372 to 1,788,381
13479
mRNA_5112: 13480 - KOG0872 Sterol C5 desaturase, at 1,789,147 to 1,790,624
13480
Group
Condition
mRNA
_5108
mRNA
_5109
mRNA
_5110
mRNA
_5111
mRNA
_5112
13476
13477
13478
13479
13480
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
N.D.
-0.0
-1.0
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.1
N.D.
-0.5
+0.1
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.0
N.D.
-0.3
+0.8
-0.9
auxotrophy
YNB Glucose 75mM Arginine
-0.5
N.D.
-0.3
+0.3
-0.2
growth on oleic acid
YNB Oleic Acid
-0.7
N.D.
-0.3
+0.7
-0.5
growth on ypd
YPD
+0.0
N.D.
-0.1
-0.6
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.7
N.D.
-0.2
+0.3
-0.0
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.5
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
-0.1
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.9
N.D.
-0.5
-0.3
-0.2
growth on oleic acid
YNB Glucose
-0.3
N.D.
-0.4
+0.7
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
-0.0
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.3
+0.1
+0.1
auxotrophy
Dropout Complete
+0.1
N.D.
-0.2
+0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
N.D.
+0.4
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
N.D.
-0.5
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
N.D.
-0.1
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
N.D.
-0.4
+0.3
+0.2
auxotrophy
YNB Glucose
-0.0
N.D.
-0.2
+0.5
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
N.D.
+0.3
+0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.3
N.D.
-0.1
+0.2
-0.1
remove
mRNA_5108
plot
remove
mRNA_5109
plot
remove
mRNA_5110
remove
mRNA_5111
plot
remove
mRNA_5112
plot