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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13477 and 13478 are separated by 262 nucleotides
13478 and 13479 are separated by 263 nucleotides
13479 and 13480 are separated by 765 nucleotides
13480 and 13481 are separated by 226 nucleotides
mRNA_5109: 13477 - K17605 PPP2R4, PTPA serine/threonine-protein phosphatase 2A activator, at 1,781,885 to 1,783,353
13477
mRNA_5110: 13478 - HMMPfam-Phosphotyrosyl phosphate activator (PTPA) protein-PF03095,SUPERFAMILY--SSF140984, at 1,783,616 to 1,785,108
13478
mRNA_5111: 13479 - K19881 BUD7, BCH1 Chs5-Arf1p-binding protein BUD7/BCH1, at 1,785,372 to 1,788,381
13479
mRNA_5112: 13480 - KOG0872 Sterol C5 desaturase, at 1,789,147 to 1,790,624
13480
mRNA_5113: 13481 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 1,790,851 to 1,792,363
13481
Group
Condition
mRNA
_5109
mRNA
_5110
mRNA
_5111
mRNA
_5112
mRNA
_5113
13477
13478
13479
13480
13481
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.0
-1.0
-0.7
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.5
-0.3
-0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.5
+0.1
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
+0.3
+0.2
-0.8
growth on ricinoleic acid
YNB Glucose
N.D.
-0.5
+0.1
+0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
+0.8
-0.9
-0.2
growth on ypd
YPD
N.D.
-0.1
-0.6
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
+0.3
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.5
+0.2
+0.3
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
+0.7
-0.5
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
-0.1
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
+0.3
-0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
+0.2
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
+0.4
-0.1
-0.2
auxotrophy
Dropout Complete
N.D.
-0.2
+0.4
+0.1
-0.3
growth on oleic acid
YNB Glucose
N.D.
-0.4
+0.7
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
+0.0
-0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
+0.1
-0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.4
-0.3
+0.0
+0.2
auxotrophy
YNB Glucose
N.D.
-0.2
+0.5
+0.5
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
+0.1
+0.1
+0.3
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