Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
13478 and 13479 are separated by 263 nucleotides
13479 and 13480 are separated by 765 nucleotides
13480 and 13481 are separated by 226 nucleotides
13481 and 13482 are separated by 296 nucleotides
mRNA_5110: 13478 - HMMPfam-Phosphotyrosyl phosphate activator (PTPA) protein-PF03095,SUPERFAMILY--SSF140984, at 1,783,616 to 1,785,108
13478
mRNA_5111: 13479 - K19881 BUD7, BCH1 Chs5-Arf1p-binding protein BUD7/BCH1, at 1,785,372 to 1,788,381
13479
mRNA_5112: 13480 - KOG0872 Sterol C5 desaturase, at 1,789,147 to 1,790,624
13480
mRNA_5113: 13481 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 1,790,851 to 1,792,363
13481
mRNA_5114: 13482 - K14820 BRX1, BRIX1 ribosome biogenesis protein BRX1, at 1,792,660 to 1,793,898
13482
Group
Condition
mRNA
_5110
mRNA
_5111
mRNA
_5112
mRNA
_5113
mRNA
_5114
13478
13479
13480
13481
13482
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-1.0
-0.7
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.3
-0.2
-0.5
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.1
-0.5
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.3
+0.2
-0.8
N.D.
growth on ricinoleic acid
YNB Glucose
-0.5
+0.1
+0.1
-0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.8
-0.9
-0.2
N.D.
growth on ypd
YPD
-0.1
-0.6
+0.0
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.3
-0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.2
+0.3
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
+0.7
-0.5
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.0
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.3
-0.0
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.4
-0.1
-0.2
N.D.
auxotrophy
Dropout Complete
-0.2
+0.4
+0.1
-0.3
N.D.
growth on oleic acid
YNB Glucose
-0.4
+0.7
-0.0
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.0
-0.0
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
-0.0
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.3
+0.0
+0.2
N.D.
auxotrophy
YNB Glucose
-0.2
+0.5
+0.5
-0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.1
+0.1
+0.3
N.D.
remove
mRNA_5110
plot
remove
mRNA_5111
plot
remove
mRNA_5112
remove
mRNA_5113
plot
remove
mRNA_5114
plot