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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13479 and 13480 are separated by 765 nucleotides
13480 and 13481 are separated by 226 nucleotides
13481 and 13482 are separated by 296 nucleotides
13482 and 13483 are separated by 233 nucleotides
mRNA_5111: 13479 - K19881 BUD7, BCH1 Chs5-Arf1p-binding protein BUD7/BCH1, at 1,785,372 to 1,788,381
13479
mRNA_5112: 13480 - KOG0872 Sterol C5 desaturase, at 1,789,147 to 1,790,624
13480
mRNA_5113: 13481 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 1,790,851 to 1,792,363
13481
mRNA_5114: 13482 - K14820 BRX1, BRIX1 ribosome biogenesis protein BRX1, at 1,792,660 to 1,793,898
13482
mRNA_5115: 13483 - Hypothetical Protein, at 1,794,132 to 1,795,760
13483
Group
Condition
mRNA
_5111
mRNA
_5112
mRNA
_5113
mRNA
_5114
mRNA
_5115
13479
13480
13481
13482
13483
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-0.7
-0.4
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.2
-0.5
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.5
-0.1
N.D.
-0.1
growth on ypd
YPD
-0.6
+0.0
+0.0
N.D.
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
-0.9
-0.2
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
+0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.2
-0.8
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.0
+0.2
N.D.
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.0
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.1
-0.2
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
-0.4
N.D.
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.1
-0.1
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
+0.2
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.2
-0.2
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.3
-0.3
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.3
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
+0.7
-0.5
-0.1
N.D.
+0.3
auxotrophy
Dropout Complete
+0.4
+0.1
-0.3
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.0
-0.2
N.D.
+0.5
growth on oleic acid
YNB Glucose
+0.7
-0.0
-0.1
N.D.
+0.3
auxotrophy
YNB Glucose
+0.5
+0.5
-0.4
N.D.
+0.5
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