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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13484 and 13485 are separated by 292 nucleotides
13485 and 13486 are separated by 634 nucleotides
13486 and 13487 are separated by 550 nucleotides
13487 and 13488 are separated by 879 nucleotides
mRNA_5116: 13484 - K00721 DPM1 dolichol-phosphate mannosyltransferase, at 1,796,200 to 1,797,488
13484
mRNA_5117: 13485 - KOG0254 Predicted transporter (major facilitator superfamily), at 1,797,781 to 1,800,000
13485
mRNA_5118: 13486 - K05349 bglX beta-glucosidase, at 1,800,635 to 1,803,494
13486
mRNA_5119: 13487 - HMMPfam-LysM domain-PF01476,SMART-Lysin motif-SM00257,SUPERFAMILY--SSF54106, at 1,804,045 to 1,805,977
13487
mRNA_5120: 13488 - K11279 NAP1L1, NRP nucleosome assembly protein 1-like 1, at 1,806,857 to 1,808,752
13488
Group
Condition
mRNA
_5116
mRNA
_5117
mRNA
_5118
mRNA
_5119
mRNA
_5120
13484
13485
13486
13487
13488
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.3
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
-0.6
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
-0.4
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.3
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
-0.3
-0.1
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.1
+0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
-0.0
-0.3
N.D.
growth on ypd
YPD
N.D.
+0.0
-0.1
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.4
+0.7
-1.0
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.4
-0.2
+0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
+0.2
+0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
+0.1
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
-0.1
+0.5
N.D.
auxotrophy
YNB Glucose
N.D.
-0.0
+0.2
+0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.4
+0.5
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
+0.0
+0.3
N.D.
auxotrophy
Dropout Complete
N.D.
-0.0
-0.1
+0.6
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
+0.1
+0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.6
+0.1
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.2
+0.7
N.D.
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