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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13485 and 13486 are separated by 634 nucleotides
13486 and 13487 are separated by 550 nucleotides
13487 and 13488 are separated by 879 nucleotides
13488 and 13489 are separated by 351 nucleotides
mRNA_5117: 13485 - KOG0254 Predicted transporter (major facilitator superfamily), at 1,797,781 to 1,800,000
13485
mRNA_5118: 13486 - K05349 bglX beta-glucosidase, at 1,800,635 to 1,803,494
13486
mRNA_5119: 13487 - HMMPfam-LysM domain-PF01476,SMART-Lysin motif-SM00257,SUPERFAMILY--SSF54106, at 1,804,045 to 1,805,977
13487
mRNA_5120: 13488 - K11279 NAP1L1, NRP nucleosome assembly protein 1-like 1, at 1,806,857 to 1,808,752
13488
mRNA_5121: 13489 - K01137 GNS N-acetylglucosamine-6-sulfatase, at 1,809,104 to 1,811,514
13489
Group
Condition
mRNA
_5117
mRNA
_5118
mRNA
_5119
mRNA
_5120
mRNA
_5121
13485
13486
13487
13488
13489
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.3
-0.4
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.0
-0.3
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.6
-0.2
N.D.
+0.6
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
+0.0
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.3
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.4
-0.2
N.D.
+0.5
growth on ricinoleic acid
YNB Glucose
+0.4
-0.2
+0.0
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.1
+0.1
-0.1
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.7
-1.0
N.D.
-0.1
growth on ypd
YPD
+0.0
-0.1
+0.0
N.D.
+0.2
auxotrophy
YNB Glucose
-0.0
+0.2
+0.3
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.1
+0.0
N.D.
-0.4
auxotrophy
Dropout Complete
-0.0
-0.1
+0.6
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.1
+0.2
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.5
-0.4
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.1
+0.5
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
+0.5
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
+0.7
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
+0.3
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.0
+0.3
N.D.
+0.5
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