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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
13487 and 13488 are separated by 879 nucleotides
13488 and 13489 are separated by 351 nucleotides
13489 and 13490 are separated by 442 nucleotides
13490 and 13491 are separated by 515 nucleotides
mRNA_5119: 13487 - HMMPfam-LysM domain-PF01476,SMART-Lysin motif-SM00257,SUPERFAMILY--SSF54106, at 1,804,045 to 1,805,977
13487
mRNA_5120: 13488 - K11279 NAP1L1, NRP nucleosome assembly protein 1-like 1, at 1,806,857 to 1,808,752
13488
mRNA_5121: 13489 - K01137 GNS N-acetylglucosamine-6-sulfatase, at 1,809,104 to 1,811,514
13489
mRNA_5122: 13490 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,811,957 to 1,814,516
13490
mRNA_5123: 13491 - K14826 FPR3_4 FK506-binding nuclear protein, at 1,815,032 to 1,816,842
13491
Group
Condition
mRNA
_5119
mRNA
_5120
mRNA
_5121
mRNA
_5122
mRNA
_5123
13487
13488
13489
13490
13491
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
N.D.
-0.1
+0.2
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.4
N.D.
-0.0
+0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.1
+0.4
-0.5
growth on ypd
YPD
+0.0
N.D.
+0.2
+0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.1
-0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
N.D.
+0.1
+0.4
-0.0
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
-0.2
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
+0.2
-0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.2
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
-0.4
+0.5
+0.6
growth on oleic acid
YNB Glucose
-0.1
N.D.
+0.2
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
+0.6
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
+0.5
+0.4
+0.1
auxotrophy
YNB Glucose
+0.3
N.D.
-0.2
+0.4
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
-0.4
+0.4
+0.9
auxotrophy
Dropout Complete
+0.6
N.D.
-0.3
+0.0
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
N.D.
+0.5
+0.3
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.5
N.D.
-0.1
+0.2
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.7
N.D.
-0.2
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.6
+0.4
+0.4
growth on oleic acid
YNB Oleic Acid
+0.5
N.D.
+0.4
+0.0
+0.6
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